CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48590	Soybean	nucleus	94.58	94.58
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	65.13	75.73
CDY58017	Canola	cytosol, nucleus, plasma membrane	27.61	71.09
KRH60473	Soybean	cytosol	54.29	68.96
CDY21725	Canola	nucleus	62.35	66.39
CDX81855	Canola	nucleus	62.09	66.2
Zm00001d031424_P001	Maize	cytosol	14.93	66.08
Bra031010.1-P	Field mustard	nucleus	59.84	65.75
CDX83877	Canola	nucleus	61.16	65.03
CDX96740	Canola	nucleus	61.03	64.8
Bra016573.1-P	Field mustard	nucleus	58.39	63.87
Zm00001d044377_P001	Maize	cytosol	13.08	63.87
AT1G17980.1	Thale cress	nucleus	60.11	63.81
Zm00001d040140_P001	Maize	cytosol	15.19	63.54
GSMUA_AchrUn_...	Banana	nucleus	62.22	63.39
Solyc05g008630.2.1	Tomato	nucleus	55.48	61.58
Bra024894.1-P	Field mustard	nucleus	54.43	61.31
CDY17685	Canola	nucleus	54.56	61.09
Zm00001d016073_P001	Maize	cytosol	15.32	61.05
CDX77811	Canola	nucleus	55.48	60.61
Os06t0319600-01	Rice	cytosol	10.17	59.69
PGSC0003DMT400078394	Potato	nucleus	54.69	58.39
TraesCS4D01G067100.1	Wheat	nucleus	50.07	51.99
TraesCS4A01G246800.1	Wheat	nucleus	49.93	51.92
TraesCS4B01G068100.1	Wheat	nucleus	49.93	51.85
EER93704	Sorghum	cytosol	50.86	51.33
Zm00001d033448_P004	Maize	nucleus	50.46	51.28
Zm00001d013599_P016	Maize	nucleus	50.46	50.93
KRH47201	Soybean	nucleus	46.5	50.0
HORVU4Hr1G011370.8	Barley	nucleus	49.93	50.0
KRH44269	Soybean	nucleus	46.1	49.57
KRH52804	Soybean	nucleus	45.97	47.54
KRH62113	Soybean	nucleus	45.44	47.25

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100816915	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EMBL:ACUP02005915
EnsemblPlantsGene:GLYMA_09G179500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	UniProt:I1L486	EnsemblPlants:KRH39125	ProteinID:KRH39125	ProteinID:KRH39125.1
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0002338D2F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:40420113..40426794

Molecular Weight (calculated)

84824.7 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.512

Length

757 amino acids

Sequence
(BLAST)

001: MGIPGLSNQN NGQQRLGITE PISLAGPTED DVIKTRELEK YLQGVGLYES QEEAVGREEV LGRLDQIVKI WVKNISRAKG FNEQLVHEAN AKIFTFGSYR
101: LGVHGPGADI DTLCVGPRHA SRDEDFFGEL QKMLSEMQEV TELHPVPDAH VPVMKFKFNG VSVDLLYARL ALWVIPDDLD ISQESILQNV DEQTVLSLNG
201: CRVTDQVLRL VPNIQTFRTT LRCMRFWAKR RGVYSNVAGF LGGINLALLV ARICQLYPNA LPNMLVSRFF RVYTQWRWPN PVMLCAIEEG SLGLSVWDPR
301: RNPKDRYHLM PIITPAYPCM NSTYNVTSST LRVMSDEFRR GSEICEAMEA SKADWDTLFE PYPFFESYKN YLQIDITAEN ADDLRQWKGW VESRLRQLTL
401: KIERHTYGML QCHPHPGEFS DNSRPFHHCY FMGLQRKQGV PVNEGEQFDI RLTVEEFKHS VNAYTLWKPG MNIHVSHVKR RNIPNYIFPG GVRPTFPSKV
501: TAENKQSSKS RVPGHGQAEK PQGGKTVVVG ADDVRKRKRS EDIMDNNPRN SKSPVSLAPP SREVNEDISP ISASSSCSMK FDESEVNSIG GQKSEKPCLN
601: SPGEIPSGDS GTNGSVTNNQ QVNPVLAAAD TSNSKEEEKL AIEKIMSGPY DAHQAFPEEP EELEDDTQYK NQDKDSGGNM KNNMESLLSK PAVAEEPVIS
701: KEITCSTHLF SNEILEELEP AELSAPLLSG PPAPLPMKKP LIRLNFTSLG KAADKSA

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.