Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44269 | Soybean | nucleus | 92.61 | 92.61 |
| Solyc06g066470.2.1 | Tomato | nucleus | 51.56 | 76.74 |
| PGSC0003DMT400042602 | Potato | cytosol, nucleus, peroxisome | 36.51 | 75.15 |
| VIT_09s0002g03380.t01 | Wine grape | cytosol | 68.04 | 63.36 |
| CDY69371 | Canola | cytosol | 7.24 | 60.71 |
| KRH62113 | Soybean | nucleus | 57.39 | 55.49 |
| KRH52804 | Soybean | nucleus | 57.53 | 55.33 |
| KRH39125 | Soybean | nucleus | 50.0 | 46.5 |
| KRH48590 | Soybean | nucleus | 49.01 | 45.57 |
| KRH60473 | Soybean | cytosol | 33.95 | 40.1 |
Protein Annotations
| Gene3D:1.10.1410.10 | EntrezGene:100798218 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | EMBL:ACUP02004142 |
| EnsemblPlantsGene:GLYMA_07G015000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| GO:GO:0031123 | GO:GO:0043631 | UniProt:K7KZ14 | EnsemblPlants:KRH47201 | ProteinID:KRH47201 | ProteinID:KRH47201.1 |
| InterPro:NuclTrfase_I-like_C | PFAM:PF01909 | PFAM:PF04926 | PFAM:PF04928 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF22 |
| InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 |
| SUPFAM:SSF81631 | UniParc:UPI0002959DDC | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:1178435..1183595
Molecular Weight (calculated)
79363.2 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.340
Length
704 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSEGVGAS SKQFGVTKPI SMAGPSATDL QRTRELEKFL AASGLYESKD EAAKREEVLH RLGEIVKSWV KQLTRLRGYT GQMVEDANAI ILTFGSYRLG
101: VHGPGADLDT LCIGPSYVTR EEDFFYTLHD ILANVEEVTE LQPIPDAHVP VMKFKFDGIS IDLLYASISR LVLPEDLDIS DVSVLHNVDE PTVRSLNGCR
201: VADQILKLVP NIEHFRTTLR CLKFWAKRRG IYSNVTGFLG GVNLALLVAR VCQFYPNAVP SMLVSRFFRV YTQWRWPTPV MLCPIEENEL GFPVWHPGKN
301: PRDRSHHMPI ITPAYPCMNS SYNVSTSTLR VMMDQFQYGN KICGEIELSR ACWKALFEQY SFFESYKNYL QVDVVAADAD DLRSWKGWVE SRLRQLTLMI
401: ERDTFGKLQC HPYHHEFVDT SRLCAHCAFF MGLQRKQGEV VQEGQQFDIR GTVEEFRHSV NMYMFWKPGM EIYVSHVRRR QIPFYVVPDG YKRSRLSRPT
501: SQVENCKSFH NEVSGTEHVE RIRKRKNNDG VDVRGDAIVK RQSASPSEDR LARHSSLGTG GLSVEAVSDR QELRNVECNH LSNSGQDELD RTESPEAASN
601: SSVITSVGSS EDTGSVTVAG CVEESTGGVE MMNNGWFEDS TYGNDSVTLV KNIVASGNEV FQHELQEQFQ PNATLGMVLD SAEKVISEVV QEPVIRRLRL
701: SSTV
101: VHGPGADLDT LCIGPSYVTR EEDFFYTLHD ILANVEEVTE LQPIPDAHVP VMKFKFDGIS IDLLYASISR LVLPEDLDIS DVSVLHNVDE PTVRSLNGCR
201: VADQILKLVP NIEHFRTTLR CLKFWAKRRG IYSNVTGFLG GVNLALLVAR VCQFYPNAVP SMLVSRFFRV YTQWRWPTPV MLCPIEENEL GFPVWHPGKN
301: PRDRSHHMPI ITPAYPCMNS SYNVSTSTLR VMMDQFQYGN KICGEIELSR ACWKALFEQY SFFESYKNYL QVDVVAADAD DLRSWKGWVE SRLRQLTLMI
401: ERDTFGKLQC HPYHHEFVDT SRLCAHCAFF MGLQRKQGEV VQEGQQFDIR GTVEEFRHSV NMYMFWKPGM EIYVSHVRRR QIPFYVVPDG YKRSRLSRPT
501: SQVENCKSFH NEVSGTEHVE RIRKRKNNDG VDVRGDAIVK RQSASPSEDR LARHSSLGTG GLSVEAVSDR QELRNVECNH LSNSGQDELD RTESPEAASN
601: SSVITSVGSS EDTGSVTVAG CVEESTGGVE MMNNGWFEDS TYGNDSVTLV KNIVASGNEV FQHELQEQFQ PNATLGMVLD SAEKVISEVV QEPVIRRLRL
701: SSTV
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.