Factsheet for PGSC0003DMT400042602

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0073g00320.t01	Wine grape	cytosol	13.45	77.97
Solyc06g066470.2.1	Tomato	nucleus	96.2	69.56
CDY69371	Canola	cytosol	14.91	60.71
PGSC0003DMT400075574	Potato	nucleus	75.15	42.41
KRH44269	Soybean	nucleus	75.73	36.79
KRH47201	Soybean	nucleus	75.15	36.51
VIT_09s0002g03380.t01	Wine grape	cytosol	79.82	36.11
PGSC0003DMT400078394	Potato	nucleus	63.16	30.47
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	38.01	26.05
PGSC0003DMT400011757	Potato	nucleus	37.43	22.86

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0043631	GO:GO:0046872	UniProt:M1BDB7	PFAM:PF01909	PFAM:PF04928
EnsemblPlantsGene:PGSC0003DMG400016522	PGSC:PGSC0003DMG400016522	EnsemblPlants:PGSC0003DMT400042602	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000295AD0A

Description

Poly(A) polymerase [Source:PGSC_GENE;Acc:PGSC0003DMG400016522]

Coordinates

chr6:-:49133323..49139965

Molecular Weight (calculated)

38726.8 Da

IEP (calculated)

5.254

GRAVY (calculated)

-0.068

Length

342 amino acids

Sequence
(BLAST)

001: MGVSNCSITL PPTQQVPLPK EYGVTKPLSL AGPMEADIQR TKELEKFLVG AGLYESAEEA AKREGVHCQL KQIVKDWVKD LTRLRGYNDQ MVEDANAVIL
101: TFGSYRLGVH GPGADIDTLC VGPSYVNRED DFFFVLQNIL VEREEVTELQ PIPDGHVPVM KFKFDGISID LLYASISLLV VPDDLDISSE SVLCNVDEPT
201: VRSLNGCRVA DKILKDVPNI EFFRITLRCL KFWAKQRGVY SNVTGFLGGV NWALLVARVC QLYPNVVLSM LVSRFFRVYT QWRWPNPVML CQIEDKEFGF
301: SIWDPRKNPW DRTHQMPIIT PAYPCMNSSY NVSASTFRVM TE

Best Arabidopsis Sequence Match ( AT4G32850.2 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.