Factsheet for PGSC0003DMT400078394

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008630.2.1	Tomato	nucleus	87.31	90.76
CDY58017	Canola	cytosol, nucleus, plasma membrane	26.8	64.63
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	30.47	63.16
Zm00001d031424_P001	Maize	cytosol	15.09	62.57
Zm00001d040140_P001	Maize	cytosol	15.51	60.77
Zm00001d044377_P001	Maize	cytosol	13.12	60.0
Zm00001d016073_P001	Maize	cytosol	15.66	58.42
VIT_01s0011g04320.t01	Wine grape	nucleus	57.83	57.26
Os06t0319600-01	Rice	cytosol	10.3	56.59
CDY21725	Canola	nucleus	55.71	55.56
CDX81855	Canola	nucleus	55.57	55.49
PGSC0003DMT400075574	Potato	nucleus	47.25	55.28
CDX96740	Canola	nucleus	55.43	55.12
AT1G17980.1	Thale cress	nucleus	55.29	54.98
KRH39125	Soybean	nucleus	58.39	54.69
CDX83877	Canola	nucleus	54.87	54.63
Bra031010.1-P	Field mustard	nucleus	53.03	54.57
Bra016573.1-P	Field mustard	nucleus	52.89	54.19
GSMUA_AchrUn_...	Banana	nucleus	55.99	53.43
Bra024894.1-P	Field mustard	nucleus	50.63	53.42
CDY17685	Canola	nucleus	50.63	53.11
KRH48590	Soybean	nucleus	56.7	53.1
CDX77811	Canola	nucleus	51.62	52.81
TraesCS4B01G068100.1	Wheat	nucleus	50.63	49.25
TraesCS4A01G246800.1	Wheat	nucleus	50.49	49.18
TraesCS4D01G067100.1	Wheat	nucleus	50.35	48.97
KRH60473	Soybean	cytosol	40.76	48.49
HORVU4Hr1G011370.8	Barley	nucleus	50.92	47.75
Zm00001d033448_P004	Maize	nucleus	48.8	46.44
EER93704	Sorghum	cytosol	48.94	46.27
Zm00001d013599_P016	Maize	nucleus	48.38	45.73
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	22.85	32.46
PGSC0003DMT400011757	Potato	nucleus	24.68	31.25

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:102594846	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	UniProt:M1D013
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	EnsemblPlantsGene:PGSC0003DMG400030520	PGSC:PGSC0003DMG400030520
EnsemblPlants:PGSC0003DMT400078394	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0002967B90	SEG:seg

Description

Poly(A) polymerase alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400030520]

Coordinates

chr5:-:3684228..3692228

Molecular Weight (calculated)

79813.6 Da

IEP (calculated)

6.054

GRAVY (calculated)

-0.352

Length

709 amino acids

Sequence
(BLAST)

001: MSNTAYGISE PISTGGPSEL DVVRNRELEK FLEDAGLYES HEEAIKREEV LGRLDQIVKT WVKNVCRAKG FNDDLVHEAN AKIFTFGSYR LGVHGPGADI
101: DTLCVGPRHA MREDFFGELH RMLEEMPEIQ ELHPVPDAHV PVMKFKFNGV SIDLLYANVS LWVIPEDLDV SQESILQNVD DQTVRSLNGC RVTDQVLHLV
201: PNIQSFRTAL RCMRLWAKRR GVYSNVTGFL GGINWALLVA RICQLYPNAA PSMLVSRFFR VYSLWRWPNP VLLCPINEGS LGLAYWDPRR NFKDRQHLMP
301: IITPAYPCMN SSYNVSTSTL RVMMEEFLRG NEICEAIEAN KASWGSLFEP FPFFEAYKNY LRIDIATESD DDMRQWKGWV ESRIRLLTLK IERDTVGVLQ
401: CHPHPGEFSD KSKPFHHSYF MGLRRKQGVN PQQGEQFDIR STVEDFKQDV YAYSFWKSSM GIHVCHVRRK DLPDFVFSGG VRPAQPAKSE SRSGSRSLGS
501: AKTTSPDAAS SRKRKHDEVN TGFSPKGSDA SSPGESRELK RFDADIGDTS STTLVDNQST LPVPVPAPAS GATVTETITV VQSAELTVGQ QSGPHGVEDL
601: GYDLELTNGV KHFDGANELQ TVPPTPEQIV GAATSEEKDR IGGSSTNVLQ SEGLEELEVV SNFIDFNFNP KRVEYLSFEI LILCTLSLSI HRLHYTNILT
701: FQLFWLHHT

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.