Factsheet for Bra024894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17685	Canola	nucleus	97.32	96.75
Bra031010.1-P	Field mustard	nucleus	72.92	71.12
Bra016573.1-P	Field mustard	nucleus	72.77	70.66
AT1G17980.1	Thale cress	nucleus	72.77	68.58
Zm00001d031424_P001	Maize	cytosol	15.62	61.4
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	58.93	60.83
Zm00001d040140_P001	Maize	cytosol	16.22	60.22
Zm00001d044377_P001	Maize	cytosol	13.84	60.0
Zm00001d016073_P001	Maize	cytosol	16.07	56.84
Os06t0319600-01	Rice	cytosol	10.71	55.81
KRH39125	Soybean	nucleus	61.31	54.43
KRH48590	Soybean	nucleus	59.97	53.24
Bra011388.1-P	Field mustard	nucleus	33.04	53.11
Solyc05g008630.2.1	Tomato	nucleus	53.87	53.08
GSMUA_AchrUn_...	Banana	nucleus	57.14	51.68
KRH60473	Soybean	cytosol	44.94	50.67
PGSC0003DMT400078394	Potato	nucleus	53.42	50.63
TraesCS4D01G067100.1	Wheat	nucleus	51.19	47.19
TraesCS4A01G246800.1	Wheat	nucleus	51.04	47.12
TraesCS4B01G068100.1	Wheat	nucleus	51.04	47.05
HORVU4Hr1G011370.8	Barley	nucleus	51.34	45.63
Zm00001d033448_P004	Maize	nucleus	50.3	45.37
Zm00001d013599_P016	Maize	nucleus	50.6	45.33
EER93704	Sorghum	cytosol	50.3	45.07
Bra034276.1-P	Field mustard	cytosol	47.62	41.5
Bra029588.1-P	Field mustard	nucleus	23.81	31.13

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EnsemblPlantsGene:Bra024894	EnsemblPlants:Bra024894.1
EnsemblPlants:Bra024894.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:M4E7Y8
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682
PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000253F9B0	SEG:seg	:	:

Description

AT1G17980 (E=4e-232) | nucleotidyltransferase family protein

Coordinates

chrA06:+:24152888..24154906

Molecular Weight (calculated)

76116.0 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.427

Length

672 amino acids

Sequence
(BLAST)

001: MNKVKSMASR QQNRQIRYGI TEPISLVGPT ELDVIKTKAL ENYLQDAGLY ESNEEALRRE EVLGRLDEIV KTWIKKISRD KGLSDETVEQ ANAKIFTFGS
101: YRLKVHGPGA DIDTLCVGPR YATRENGFFG ELHRMLSELP EVTELHSVPD AYVPLMGFKL NGVSIDLLYA KLPLWIIPED LDLSQDSILQ NADEQTVRSL
201: NGCRVTDKIF RLVPNIQSFR TTLRCIRFWA KKRGVYSNVS GFLGGINWAL LVARICQLYP NASPNMLVSR FFRVYTQWRW PNPILLCSID EDEGSSLGLQ
301: VWDPRRNPKD LLHKMPIITP AYPCMNSSYN VSASTLRIMT GEFQRGRDVC AAMEAEQWDT LFEPFGFFEA YKNYLQINIS ASNVEDLKKW RGWVESRFRQ
401: LTLVIERHTY DMLQCHPHPH GFQDDSRPLQ CSLFMGLQRK EGVEAGGGEP FDIRRTIEEF KQTVYGYMLW VHGMEVSVSH VMRRSIPSFV FPCGVRPLGN
501: LKRTRDSKSS SEQRVSSTVS SSSTITSCER RGGKKRKLGG DETLTDQLRN SKRVAVSVHV ENGEDGSPNS SAGSICSAPM KVGESHPVEK IDIPQDSHSQ
601: ESEEVEDNFG FRNQVSSKDA FSKGAVEVEE LEDVPMQRPV VMPKASVQLR KPIIKLNFTS LSMTNAKNLR AC

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.