Factsheet for HORVU4Hr1G011370.8

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G246800.1	Wheat	nucleus	92.99	96.57
TraesCS4B01G068100.1	Wheat	nucleus	92.99	96.43
TraesCS4D01G067100.1	Wheat	nucleus	92.99	96.43
Zm00001d031424_P001	Maize	cytosol	18.78	83.04
Zm00001d044377_P001	Maize	cytosol	16.8	81.94
Zm00001d040140_P001	Maize	cytosol	19.05	79.56
Os06t0319600-01	Rice	cytosol	13.23	77.52
Zm00001d016073_P001	Maize	cytosol	19.44	77.37
EER93704	Sorghum	cytosol	72.09	72.67
Zm00001d013599_P016	Maize	nucleus	71.56	72.13
Zm00001d033448_P004	Maize	nucleus	70.77	71.81
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.0	64.29
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	50.0	58.06
GSMUA_AchrUn_...	Banana	nucleus	54.1	55.05
Solyc05g008630.2.1	Tomato	nucleus	49.21	54.55
CDX81855	Canola	nucleus	49.74	52.96
CDY21725	Canola	nucleus	49.74	52.88
CDX96740	Canola	nucleus	49.6	52.59
AT1G17980.1	Thale cress	nucleus	49.47	52.45
CDX83877	Canola	nucleus	49.21	52.25
Bra016573.1-P	Field mustard	nucleus	47.35	51.73
Bra031010.1-P	Field mustard	nucleus	46.96	51.52
Bra024894.1-P	Field mustard	nucleus	45.63	51.34
CDY17685	Canola	nucleus	45.77	51.18
PGSC0003DMT400078394	Potato	nucleus	47.75	50.92
CDX77811	Canola	nucleus	46.03	50.22
KRH39125	Soybean	nucleus	50.0	49.93
VIT_01s0011g04320.t01	Wine grape	nucleus	47.22	49.86
KRH48590	Soybean	nucleus	49.21	49.14
HORVU2Hr1G079870.2	Barley	nucleus	33.6	47.12
HORVU7Hr1G088370.13	Barley	nucleus	42.99	44.77
HORVU4Hr1G013750.2	Barley	nucleus	32.41	44.06
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	38.76	42.9
KRH60473	Soybean	cytosol	33.33	42.28
HORVU0Hr1G035930.1	Barley	cytosol	18.25	30.07
HORVU0Hr1G029140.2	Barley	cytosol	18.25	30.07
HORVU4Hr1G052840.1	Barley	plastid	19.84	27.68
HORVU2Hr1G016100.3	Barley	cytosol	17.46	24.91
HORVU2Hr1G105500.3	Barley	cytosol	17.46	23.83

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0045824
GO:GO:0048366	GO:GO:0048451	EnsemblPlantsGene:HORVU4Hr1G011370	EnsemblPlants:HORVU4Hr1G011370.8	UniProt:M0V3S4	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI000294E527	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:35007678..35013513

Molecular Weight (calculated)

84542.1 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.380

Length

756 amino acids

Sequence
(BLAST)

001: MAKSNTGYLG VSEPISLSGP TEKDVVQTAE VEKFLADAGL YESQEEAVSR EEVLGKLDQT VKTWIKKATR VSGYGDQFVH EANAKIFTFG SYRLGVHGPG
101: ADIDTLCVGP RHATRNDYFF RCLHDMLAEM PEVSELHPVP DAHVPVLGFK LCGVSIDLLY ANLAHVVIPD DLDLSQDSIL HNVDEQAVRS LNGCRVTDQI
201: LRLVPNIPVC VACFSSKHVN IILWTKTHLF SRIQSFRTTL RFMRYWGKRR GVYSNVMGFL GGINWAILVA RICQLYPNAS PSMLISRFFR VYSQWKWPNP
301: VTLCHIEEGP LGLPVWDPRR NFRDRGHQMP IITPAYPCMN SSYNVSTSTR YVMIQEFTRG YEICQAIDEN RATWDDLFEP YPFFELYKNY LEVGITARSE
401: DDLRNWKGWV ESRLRTLVLK FERYTHEMLL AHPHPRDFSD GSRPLHSFYF MGLWRKQTAQ PQEAEQFDIR GIVNEFKSAV LAYAHRREGM DIEVSHVKRK
501: DIPLFVFPGG VRPPRSSRTA ARSSRTVSRN VVTADGQVGN PLGAESWSDP QSALDHSGGY QSTLLVPSVS SKETPSILNG HSNLHTESVE HEHPGHLLGS
601: TSTPGNIAVL DVVTQPNSMP STSSNGAPTN GLDICLNNSL HREAEGIPAN NPVNFAPAVV DELDELASYQ AKPDNKYVLP VHGSSSEGCS GRTLEQTCNL
701: SSHDNNNHLK RKAEEELEPL ELAGPPVGAT RASTSTVQRK PLRLRLSTVP QPKQAE

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.