Factsheet for HORVU7Hr1G088370.13

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G365600.4	Wheat	nucleus	97.66	97.66
TraesCS7B01G270600.4	Wheat	nucleus	97.52	97.66
TraesCS7A01G357100.1	Wheat	nucleus	96.14	95.62
OQU76574	Sorghum	nucleus	78.37	81.87
Zm00001d036977_P001	Maize	nucleus	76.72	79.34
Bra011388.1-P	Field mustard	nucleus	38.84	67.46
Zm00001d046255_P035	Maize	nucleus	76.45	67.27
PGSC0003DMT400075574	Potato	nucleus	54.55	65.35
Solyc12g095890.1.1	Tomato	nucleus	53.99	64.58
GSMUA_Achr10P...	Banana	nucleus	61.29	64.03
GSMUA_Achr6P14860_001	Banana	nucleus	56.47	60.83
VIT_11s0016g03040.t01	Wine grape	nucleus	48.9	59.36
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	55.51	59.0
KRH52804	Soybean	nucleus	59.09	58.61
KRH62113	Soybean	nucleus	58.68	58.52
CDX68897	Canola	nucleus	57.3	57.38
CDX75292	Canola	nucleus	57.58	57.34
GSMUA_Achr9P16270_001	Banana	nucleus	61.16	55.5
CDX77017	Canola	nucleus	56.34	54.46
AT4G32850.8	Thale cress	nucleus	56.89	53.99
CDY35331	Canola	nucleus	56.61	53.94
HORVU2Hr1G079870.2	Barley	nucleus	39.94	53.8
Solyc08g066200.2.1	Tomato	nucleus	58.26	53.75
Bra034276.1-P	Field mustard	cytosol	56.34	53.05
AT2G25850.2	Thale cress	nucleus	57.02	51.75
HORVU4Hr1G013750.2	Barley	nucleus	39.26	51.26
HORVU4Hr1G011370.8	Barley	nucleus	44.77	42.99
HORVU0Hr1G035930.1	Barley	cytosol	21.21	33.55
HORVU0Hr1G029140.2	Barley	cytosol	21.21	33.55
HORVU4Hr1G052840.1	Barley	plastid	21.63	28.97
HORVU2Hr1G105500.3	Barley	cytosol	21.21	27.8
HORVU2Hr1G016100.3	Barley	cytosol	20.25	27.74

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A287X887	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	EnsemblPlantsGene:HORVU7Hr1G088370	EnsemblPlants:HORVU7Hr1G088370.13	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000B4678B4	:

Description

No Description!

Coordinates

chrchr7H:+:535602695..535608636

Molecular Weight (calculated)

80898.9 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.367

Length

726 amino acids

Sequence
(BLAST)

001: MATSNKPISL AGPLDADVQR TAELNKFLVE AGLYESADES ARREEVLGEL DKIVKVWVKQ LTSQRGYTDQ MVEEANAVLF TFGSYRLGVH GPGADIDTLC
101: VGPSYVNREE DFFIVLHDIL AQTEDVSQLQ PVPDAHVPVM KFKFHGISID LLYASVSLLV VPSDLDISQE AVLYDIDEAT VRSLTGCRVA DQILRLVPNI
201: ESFRTTLRCL KHWARRRGVY SNVTGFLGGV NWALLVARVC QLYPNAVPSM LVSRFFRVFT QWRWPTPVML CAIEEEELGF PVWDPRKNPR DRTHHMPIIT
301: PAYPCMNSSY NVSTSTLRVM IEQFQFGNKI CQEIEMNKAS WSALFEPFNF FEAYKNYLQV DIIAEDDEDL RLWKGWVESR LRQLTLKIER DTYGKLQCHP
401: YPYEYADPSR QCAHCAFFMG LSRKEGVKIQ EGQQFDIRGT VDEFRHEINM YMFWKPGMEL AVSHVRRKEI PAYVFPEGYK RPRPQRHVNH QHQSDKNDPG
501: NGSPDSQLKR KHDSTGIDDT EPCQSVKRAS ISPGHPKTSS PRSGNVSDEP ISNSQQKVTS NASGGSQDSP GSGNQDQTKC SGSSHASEKS LDSVASGSKC
601: VKIEAVCSGD VTSKHVDCIS PVKDSIAPTV AVSTTLKRVA EKVVLELVGS ESMGGNNAEL LQIAETDMGN VLVENLHFGG NGVPQSGLPE ELELNNGIEV
701: LFKAHAGVKS DGFQKLSLRV SLTSTA

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.