CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77017	Canola	nucleus	96.59	98.0
Bra034276.1-P	Field mustard	cytosol	98.43	97.28
AT2G25850.2	Thale cress	nucleus	82.41	78.5
CDY65137	Canola	cytosol, nucleus, plastid	8.53	77.38
CDY52248	Canola	cytosol, nucleus, plastid	8.53	77.38
CDX75292	Canola	nucleus	72.7	75.99
CDX68897	Canola	nucleus	72.05	75.72
PGSC0003DMT400075574	Potato	nucleus	53.81	67.66
Solyc12g095890.1.1	Tomato	nucleus	53.41	67.05
CDY69371	Canola	cytosol	7.22	65.48
GSMUA_Achr10P...	Banana	nucleus	55.64	61.01
KRH62113	Soybean	nucleus	57.87	60.58
OQU76574	Sorghum	nucleus	55.25	60.58
KRH52804	Soybean	nucleus	58.01	60.38
Zm00001d036977_P001	Maize	nucleus	55.51	60.26
Os02t0227400-01	Rice	extracellular	47.9	59.84
GSMUA_Achr6P14860_001	Banana	nucleus	52.23	59.05
TraesCS7B01G270600.4	Wheat	nucleus	54.33	57.1
TraesCS7D01G365600.4	Wheat	nucleus	54.33	57.02
Solyc08g066200.2.1	Tomato	nucleus	58.79	56.92
VIT_11s0016g03040.t01	Wine grape	nucleus	44.62	56.86
CDY58017	Canola	cytosol, nucleus, plasma membrane	21.92	56.8
HORVU7Hr1G088370.13	Barley	nucleus	53.94	56.61
TraesCS7A01G357100.1	Wheat	nucleus	54.07	56.44
Zm00001d053559_P007	Maize	mitochondrion	49.74	55.33
KXG29853	Sorghum	mitochondrion	50.13	54.73
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	47.77	53.29
GSMUA_Achr9P16270_001	Banana	nucleus	55.64	53.0
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	48.03	52.21
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	46.85	51.15
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	46.59	50.64
Zm00001d046255_P035	Maize	nucleus	54.59	50.42
CDX96740	Canola	nucleus	45.41	48.53
CDX83877	Canola	nucleus	45.14	48.31
CDY21725	Canola	nucleus	44.62	47.82
CDX81855	Canola	nucleus	44.49	47.75
CDY17685	Canola	nucleus	41.99	47.34
CDX77811	Canola	nucleus	41.99	46.18
CDY24682	Canola	nucleus	22.7	35.38
CDY05277	Canola	nucleus	22.97	34.11

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078HC40	UniProt:A0A078HC40
EnsemblPlants:CDY35331	ProteinID:CDY35331	ProteinID:CDY35331.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00058301001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EEBD76
SEG:seg	:	:	:	:	:

Description

BnaA04g15160DBnaA04g15160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC40]

Coordinates

chrLK032350:+:139651..143682

Molecular Weight (calculated)

86406.0 Da

IEP (calculated)

5.499

GRAVY (calculated)

-0.449

Length

762 amino acids

Sequence
(BLAST)

001: MVGTQALKSY GITKPLSVSG PSAADLKRNL ELEKFLVDEG LYESKEETMR REEVLGRIDQ IVKEWVKELT HQRGYSDQMM EDANALIFTF GSYRLGVHGP
101: GADIDTLCVG PSYVNREEDF FIILRDILAE MEEVTDLQPV TDAHVPVMKF KFQGISIDLL YASISLLVVP QDLDISNSSV LSDVDEQTVR SLNGCRVADQ
201: ILKLVPNFEH FRTTLRCMKY WAKRRGVYSN VTGFLGGVNW ALLVARLCQL YPNAIPSMLV SRFFRVYTQW RWPNPVMLCA IEEDELGIPV WDPRKYHRDR
301: YHLMPIITPA YPCMNSSYNV SQSTLRVMME QFQYGNKICQ EIELNKQHWS SLFEQYMFFE AYKNYLQVDV LAADAEDLLA WKGWVESRFR QLTLKIERDT
401: NGMLMCHPQP NEYVDTSKQF RHCAFFMGLQ RAEGYGGQEC QQFDIRGTVD EFRQDVNMYM FWRPGMDVFV SHVRRRQLPP FVFPNGYKRF RQPKLQNQQG
501: GEPGEPVESL SANVERHAKR KNDNELMDTR PEKPEKRASV SPPSVDVVSP ESSAITTGGT PPIGIVSGPR AECVVTSDIG CSIPNDLNSG SKQNVEVDNR
601: SLVQGCRDLA EPVGKDARPD PSVVVTCEGG QNKEKGRVVD SESINDTDKQ RLPRRPNLKE DVDRVERESM LGEIADGVLQ NGLCRRSLDH EGFLAAASLD
701: SSGEHRNLHS DGLLKSGLSE ELQTNNLLMG MGRPEDGARS ESLQNSLMRH VLLQPIVNLC KS

Best Arabidopsis Sequence Match ( AT2G25850.2 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGARSES LQNEMMRHVF LQPIIGLCKS

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.