Factsheet for Zm00001d046255_P035

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76574	Sorghum	nucleus	78.3	92.95
Zm00001d036977_P001	Maize	nucleus	78.18	91.88
TraesCS7B01G270600.4	Wheat	nucleus	67.76	77.1
TraesCS7D01G365600.4	Wheat	nucleus	67.27	76.45
HORVU7Hr1G088370.13	Barley	nucleus	67.27	76.45
TraesCS7A01G357100.1	Wheat	nucleus	67.52	76.3
Bra011388.1-P	Field mustard	nucleus	34.3	67.7
PGSC0003DMT400075574	Potato	nucleus	47.76	65.02
Solyc12g095890.1.1	Tomato	nucleus	47.64	64.74
GSMUA_Achr10P...	Banana	nucleus	53.45	63.45
Zm00001d053559_P007	Maize	mitochondrion	51.64	62.19
GSMUA_Achr6P14860_001	Banana	nucleus	50.18	61.42
VIT_11s0016g03040.t01	Wine grape	nucleus	42.79	59.03
CDX68897	Canola	nucleus	51.03	58.07
KRH62113	Soybean	nucleus	51.15	57.97
CDX75292	Canola	nucleus	51.15	57.89
KRH52804	Soybean	nucleus	50.91	57.38
Zm00001d031424_P001	Maize	cytosol	11.88	57.31
GSMUA_Achr9P16270_001	Banana	nucleus	54.18	55.88
CDX77017	Canola	nucleus	50.42	55.39
AT4G32850.8	Thale cress	nucleus	51.27	55.29
CDY35331	Canola	nucleus	50.42	54.59
Zm00001d044377_P001	Maize	cytosol	10.18	54.19
Zm00001d040140_P001	Maize	cytosol	11.88	54.14
Bra034276.1-P	Field mustard	cytosol	50.18	53.7
Solyc08g066200.2.1	Tomato	nucleus	51.03	53.49
Zm00001d016073_P001	Maize	cytosol	12.24	53.16
Zm00001d002505_P001	Maize	nucleus	34.91	52.17
AT2G25850.2	Thale cress	nucleus	49.09	50.62
Zm00001d033448_P004	Maize	nucleus	39.15	43.36
Zm00001d013599_P016	Maize	nucleus	38.91	42.8
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	6.06	34.48
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	6.06	31.45
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	18.67	30.32
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	19.76	30.19
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	18.42	28.36

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6P1T9	ProteinID:AQL03993.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI0008425AB9	EnsemblPlantsGene:Zm00001d046255	EnsemblPlants:Zm00001d046255_P035	EnsemblPlants:Zm00001d046255_T035	:

Description

Nuclear poly(A) polymerase 2

Coordinates

chr9:+:77027118..77035751

Molecular Weight (calculated)

92755.7 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.318

Length

825 amino acids

Sequence
(BLAST)

001: MASGSDPPKQ YGITKPLSLL GPVEADLQRT AELEKFLVEA GLYESPDESA RREEVLGKLG QIVKDWVKQL TSQRGYTDQM VEEANAVLFT FGSYRLGVHG
101: PGADVDTLCV GPSYVNREED FFIVLHEILA QTEDVTELQP VPDAHVPVMK FKFHGISIDL LYASVSLLVV PAELDISQGS VLYAVDEATV RSLNGCRVAD
201: RIIRLVPNIE NFRTALRCLK CWAKRRGVYS NVTGFLGGVN WALLVARVCQ LYPNAVPSML VSRFFRVFTQ WQWPNPVMLC SIEEDELGFP VWDPRKNPRD
301: KCHHMPIITP AYPCMNSSYN VSTSTLRVMV EQFQFGNKIC QEIEMNKASW SALFEPFQFF EAYRNYLQVD IIAEDDEDLR LWKGWVESRL RQLTLKIERD
401: TYGMLQCHPY PHEYADPSRQ CAHCAFFMGL SRKEGVKIQE GQQFDIRGTV DEFRHEINLY MFWKPGMELA VSHVRRKQIP AYVFPEGYKR PRPSRHVNHQ
501: SDKNDTEDGT MISSPDSQLK RRHNSVGTDD IEPSWPAKRS SVSPVHPKNS PQSGSSGDET RCNNQIKRAP SDATGGSPAS PQALERSPDT IMSAPRCTTA
601: GAVCSGDAIN KHDVPHVENC NTPTVAVCTT LKRVAEKVVS ELVGSERMGN NNSAESLESM EKAENVCFSG NGVSQGGLPE ELEVMFLVHP APAFVLCMNK
701: DTSWKSLLRH GLELSPCAFS IYIALFSLYS AVWYLSATLW QDQWRQRHKI EGRIVEIDKF YRLLGGMVSS STHKFPSGHR FAIAEVSLTG DGRKSCLVTA
801: WQKTTKKISC KGMVEYYVLL LASQS

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.