Factsheet for Solyc08g066200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095890.1.1	Tomato	nucleus	63.66	82.54
Solyc06g066470.2.1	Tomato	nucleus	46.12	76.74
Bra011388.1-P	Field mustard	nucleus	37.61	70.81
KRH62113	Soybean	nucleus	58.83	63.6
KRH52804	Soybean	nucleus	58.83	63.25
GSMUA_Achr10P...	Banana	nucleus	55.27	62.59
CDX68897	Canola	nucleus	56.92	61.79
CDX75292	Canola	nucleus	57.05	61.59
OQU76574	Sorghum	nucleus	54.0	61.15
GSMUA_Achr6P14860_001	Banana	nucleus	52.1	60.83
Os02t0227400-01	Rice	extracellular	46.89	60.49
Zm00001d036977_P001	Maize	nucleus	53.75	60.26
CDX77017	Canola	nucleus	56.54	59.25
CDY35331	Canola	nucleus	56.92	58.79
TraesCS7D01G365600.4	Wheat	nucleus	53.88	58.4
HORVU7Hr1G088370.13	Barley	nucleus	53.75	58.26
TraesCS7A01G357100.1	Wheat	nucleus	54.0	58.22
TraesCS7B01G270600.4	Wheat	nucleus	53.62	58.21
Bra034276.1-P	Field mustard	cytosol	56.92	58.11
AT4G32850.8	Thale cress	nucleus	56.42	58.04
VIT_11s0016g03040.t01	Wine grape	nucleus	44.09	58.03
Zm00001d053559_P007	Maize	mitochondrion	49.56	56.93
KXG29853	Sorghum	mitochondrion	49.17	55.44
AT2G25850.2	Thale cress	nucleus	56.16	55.25
GSMUA_Achr9P16270_001	Banana	nucleus	55.27	54.38
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	47.01	54.17
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	47.65	53.49
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	46.51	52.44
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	46.12	51.78
Zm00001d046255_P035	Maize	nucleus	53.49	51.03
Solyc05g008630.2.1	Tomato	nucleus	43.33	50.0
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	20.2	33.19
Solyc12g099180.1.1	Tomato	cytosol	18.3	33.1

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
UniProt:K4CLJ7	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:Solyc08g066200.2	EnsemblPlants:Solyc08g066200.2.1	UniParc:UPI000276BAB5	SEG:seg

Description

No Description!

Coordinates

chr8:+:54630030..54641889

Molecular Weight (calculated)

88388.7 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.445

Length

787 amino acids

Sequence
(BLAST)

001: MGSESLTPPP VVAAAAEAAP PPKKQGVTKP LSLAGPTEAD LQRNEALENF LKESELYESE EETARREEVL HQIDQIVKSW VKQLTHQRGY TDQMVEDANA
101: MIFTFGSYRL GVHGPGADID TLCVGPSYVN RDEDFFIILH DILAEKEEVS ELQPVPDAHV PVMKFKFQGI SIDLLYASIS LLVVPEDLDI SDQSVLHNVD
201: EPTVRSLNGC RVADQILKLV PNAEHFRTTL RCLKFWAKRR GVYSNVTGFL GGVNWALLVA RICQFYPNAL PSMLVSRFFR VYTQWRWPNP VMLCPIEEDE
301: LGFLVWDPRK NPKDRTHHMP IITPAYPCMN SSYNVSPSTL RVMMDQFQFG NKICEEIELN KAQWGALFKH YLFFEVYKNY LQVDIVAADN DDLLAWKGWV
401: ESRLRQLTLK IERDTNGMLQ CHPYPNEFVD LSKPCPHCAF FTGLQRKQGV KVQEGQQFDI RGTVDEFKQD VSMYAYWRPG MDIYVSHVRR KQIPPFVFPD
501: GYKRPRQPRN TSHSTPEKVA KDCMSPEERQ PKRKQETETV HVNLGKPGKR ASISPQRIGS VSPLGSSCRS DGSSQIIISD ESQRELESSC LMDSSDDRSL
601: HRILRSRSDS SPSDSSICTP DSLNYTTLRG STLLGVSREV ELDSSNTKSL PNKEVLSPCE DICSRDVQTF QVLQNDEKGE ILGSLHQDIV GQLNEPCIQT
701: RCAESLERVT VSNSNTQNLT CEGDISLADR ISQLGDGCLS GNGELGNGLA EMSQPNLSLT RAMEPQDGTS SEAVQEAAIR LSLESTA

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.