Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042602 | Potato | cytosol, nucleus, peroxisome | 69.56 | 96.2 |
| VIT_13s0073g00320.t01 | Wine grape | cytosol | 9.51 | 76.27 |
| CDY69371 | Canola | cytosol | 10.57 | 59.52 |
| Solyc12g095890.1.1 | Tomato | nucleus | 75.48 | 58.81 |
| KRH44269 | Soybean | nucleus | 76.96 | 51.7 |
| KRH47201 | Soybean | nucleus | 76.74 | 51.56 |
| VIT_09s0002g03380.t01 | Wine grape | cytosol | 80.34 | 50.26 |
| Solyc08g066200.2.1 | Tomato | nucleus | 76.74 | 46.12 |
| Solyc05g008630.2.1 | Tomato | nucleus | 60.89 | 42.23 |
| Solyc01g058260.2.1 | Tomato | cytosol, peroxisome, plastid | 33.19 | 32.78 |
| Solyc12g099180.1.1 | Tomato | cytosol | 29.18 | 31.72 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006378 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 |
| GO:GO:0043631 | GO:GO:0046872 | UniProt:K4C7S2 | InterPro:NuclTrfase_I-like_C | PFAM:PF01909 | PFAM:PF04926 |
| PFAM:PF04928 | PIRSF:PIRSF018425 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF29 | InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom |
| InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 | EnsemblPlantsGene:Solyc06g066470.2 |
| EnsemblPlants:Solyc06g066470.2.1 | UniParc:UPI0002765DA1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:-:41723528..41729014
Molecular Weight (calculated)
54471.6 Da
IEP (calculated)
5.360
GRAVY (calculated)
-0.174
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSNCSITL PPTQQVPLPK EYGVTKPLSL AGPMEADIQR TKELEKFLVG AGLYESAEEA AKREGVLCQL KQIVKDWVKD LTRLRGYIDQ MVEDANAVIL
101: TFGSYRLGVH GPGADIDTLC VGPCYVNREN DFFFVLHNIL VEREEVTELQ PVPDAHVPVM KFKFDGISID LLYASISLLV VPDDLDISSE SVLFNVDEPT
201: VRSLNGCRVA DKILKDVPNI EFFRITLRCL KFWAKQRGVY SNVTGFLGGV NWALLVARVC QLYPNAVPSM LVSRFFRVYT QWRWPNPVML CQIEDKEFGF
301: SIWDPRKNPW DRTHQMPIIT PAYPYMNSSY NVSSSTLRVM TEQFEFGNNI CQEIDLNKAR WTALFEQYPF FESYKNYLQV DIVAADADDL LVWRGWVESR
401: LRQLTLMIER DTFGKLQCHP CPHEYVDPSK QCAHRAFFMG LQRRPGELVQ ECQQFDIRGT VDEFRHQVNM YMY
101: TFGSYRLGVH GPGADIDTLC VGPCYVNREN DFFFVLHNIL VEREEVTELQ PVPDAHVPVM KFKFDGISID LLYASISLLV VPDDLDISSE SVLFNVDEPT
201: VRSLNGCRVA DKILKDVPNI EFFRITLRCL KFWAKQRGVY SNVTGFLGGV NWALLVARVC QLYPNAVPSM LVSRFFRVYT QWRWPNPVML CQIEDKEFGF
301: SIWDPRKNPW DRTHQMPIIT PAYPYMNSSY NVSSSTLRVM TEQFEFGNNI CQEIDLNKAR WTALFEQYPF FESYKNYLQV DIVAADADDL LVWRGWVESR
401: LRQLTLMIER DTFGKLQCHP CPHEYVDPSK QCAHRAFFMG LQRRPGELVQ ECQQFDIRGT VDEFRHQVNM YMY
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.