Factsheet for Solyc12g095890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075574	Potato	nucleus	94.89	95.05
Solyc06g066470.2.1	Tomato	nucleus	58.81	75.48
Bra011388.1-P	Field mustard	nucleus	46.46	67.46
Solyc08g066200.2.1	Tomato	nucleus	82.54	63.66
Os02t0227400-01	Rice	extracellular	59.47	59.18
GSMUA_Achr10P...	Banana	nucleus	67.55	58.99
KRH62113	Soybean	nucleus	70.51	58.79
GSMUA_Achr6P14860_001	Banana	nucleus	65.24	58.75
KRH52804	Soybean	nucleus	70.51	58.47
OQU76574	Sorghum	nucleus	65.24	56.98
VIT_11s0016g03040.t01	Wine grape	nucleus	55.85	56.69
CDX68897	Canola	nucleus	67.55	56.55
Zm00001d036977_P001	Maize	nucleus	65.24	56.41
CDX75292	Canola	nucleus	67.55	56.24
Zm00001d053559_P007	Maize	mitochondrion	61.78	54.74
CDX77017	Canola	nucleus	67.22	54.33
TraesCS7B01G270600.4	Wheat	nucleus	64.58	54.07
HORVU7Hr1G088370.13	Barley	nucleus	64.58	53.99
TraesCS7D01G365600.4	Wheat	nucleus	64.58	53.99
TraesCS7A01G357100.1	Wheat	nucleus	64.91	53.97
CDY35331	Canola	nucleus	67.05	53.41
AT4G32850.8	Thale cress	nucleus	67.22	53.33
KXG29853	Sorghum	mitochondrion	61.12	53.15
Bra034276.1-P	Field mustard	cytosol	67.05	52.79
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	58.81	52.27
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	59.64	51.64
AT2G25850.2	Thale cress	nucleus	67.05	50.88
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	58.32	50.72
GSMUA_Achr9P16270_001	Banana	nucleus	66.06	50.12
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	57.83	50.07
Zm00001d046255_P035	Maize	nucleus	64.74	47.64
Solyc05g008630.2.1	Tomato	nucleus	53.21	47.36
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	26.52	33.61
Solyc12g099180.1.1	Tomato	cytosol	23.23	32.41

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:K4DH62	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
EnsemblPlantsGene:Solyc12g095890.1	EnsemblPlants:Solyc12g095890.1.1	UniParc:UPI0002769A0B	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:64996528..65002355

Molecular Weight (calculated)

69447.9 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.468

Length

607 amino acids

Sequence
(BLAST)

001: MMVSSESLSE SVAPPPKKYG VTKPLSLAGP TETDLQRNAE LEKFLRESEL YESEEETARR EEVLRRLDQI VKQWVKQLTR QRGYIDQMVE DANAIIVTFG
101: SYRLGVHGPG ADLDTLCVGP CYVNREEDFF ILLHDILAEM EEVCELQPVP DAHVPVMKFK FQGISIDLLY ASITLLVIPE DLDISDQSVL CNVDGPTVRS
201: LNGCRVADRI LKLVPNAKHF RTTLRCLKFW AKRRCVYSNV TGFLGGVNWA LLVARICQFY PNAIPSMLVS RFFRVYTQWR WPNPVMLCPI EEDELGFLVW
301: DPRKNPKDRT HHMPIITPAY PCMNSSYNVS PSTLRVMMDQ FQIGNKISED VELNKSQWPA LFEHYFFFEA YKNYLQVEIV AADNDDLLAW KGWVESRLRQ
401: LTLKIERDTN GTLQCHPYPN EFADMSKPCP HCVFFMGLQR QKGVKVQEGQ RFDIRGTVDE FKQEVNMYSY WRPGMDIYIS HVPRREIPAY VFPDGYKRPR
501: QSRNTTQHTP EKDAKGCMSS EGRRSKRKQE THTVDVESDK LPKRASISPQ NIGSVSPASV SSRSGGSSQI IIPEESLQEV KTAGLQNQSS DDKSTEDTGE
601: QKPCISE

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.