Factsheet for GSMUA_Achr10P14010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14860_001	Banana	nucleus	68.06	70.18
Bra011388.1-P	Field mustard	nucleus	41.01	68.18
PGSC0003DMT400075574	Potato	nucleus	59.28	67.99
GSMUA_Achr9P16270_001	Banana	nucleus	78.13	67.88
Solyc12g095890.1.1	Tomato	nucleus	58.99	67.55
OQU76574	Sorghum	nucleus	64.32	64.32
Os02t0227400-01	Rice	extracellular	55.68	63.44
Zm00001d036977_P001	Maize	nucleus	64.03	63.39
HORVU7Hr1G088370.13	Barley	nucleus	64.03	61.29
TraesCS7D01G365600.4	Wheat	nucleus	64.03	61.29
TraesCS7B01G270600.4	Wheat	nucleus	63.88	61.24
VIT_11s0016g03040.t01	Wine grape	nucleus	52.23	60.7
TraesCS7A01G357100.1	Wheat	nucleus	63.74	60.68
Zm00001d053559_P007	Maize	mitochondrion	58.99	59.85
CDX68897	Canola	nucleus	62.01	59.45
CDX75292	Canola	nucleus	62.01	59.12
KRH62113	Soybean	nucleus	61.87	59.07
KRH52804	Soybean	nucleus	61.58	58.47
KXG29853	Sorghum	mitochondrion	57.99	57.74
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	55.97	56.95
CDX77017	Canola	nucleus	61.15	56.59
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	56.4	55.92
CDY35331	Canola	nucleus	61.01	55.64
Solyc08g066200.2.1	Tomato	nucleus	62.59	55.27
AT4G32850.8	Thale cress	nucleus	60.58	55.03
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	55.11	54.87
Bra034276.1-P	Field mustard	cytosol	60.86	54.86
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	54.68	54.21
Zm00001d046255_P035	Maize	nucleus	63.45	53.45
AT2G25850.2	Thale cress	nucleus	60.58	52.62
GSMUA_AchrUn_...	Banana	nucleus	51.08	47.78
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	25.47	31.78

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSMUA_Achr10G14010_001	EnsemblPlants:GSMUA_Achr10P14010_001
EnsemblPlants:GSMUA_Achr10T14010_001	UniProt:M0RI27	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928
PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000296676C	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G14010_001]

Coordinates

chr10:+:22397275..22407559

Molecular Weight (calculated)

78618.1 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.469

Length

695 amino acids

Sequence
(BLAST)

001: MGSSDQEFST PPPASRQFGI TKPISTAGPT ETDLKRTIEL EEFLVDAGLH EISEEATKRE EVLGEIDKIV KSWVKQLTRQ RGYSDQMVEE ANAVIFTFGS
101: YRLGVHGPGA DIDTLCVGPS YVNREEDFFI ILHDILAEKE EVSELQPVPD AHVPVMKFKF HGISIDLLYA SISRLVVPQD LDISHGSVLY DVDEATVRSL
201: NGCRVADQIL RLVPNIENFR TALRCLKFWA KRRGVYSNVT GFLGGVNWAL LVARVCQLYP NAVPSMLVSR FFRVYTQWRW PNPVMLCAIE EDELGFPVWD
301: PRKNPRDRTH HMPIITPAYP CMNSSYNVST STLRVMMEQF QIGNKICEDI ELNKAGWGAL FEPYLFFETY KNYLQVDIVA VDAEDLRLWK GWVESRLRQL
401: TLKIERDTYG MLQCHPYPNE YEDPSKQCSH CAFFMGLQRK QGVKIQEGQQ FDIRGTVDEF RHEVNMYMFW KPGMELYVSH VRRKQIPSYV FPEGYKRPRP
501: SRVICQQLVD KTSGEDIGEE CEGGSSERRL KRKGDADCSG ARPNKPEKRA SISPTHEKLP TTDQQDHEEV IFNDSVDVRA NSLKDLMAVK GIEDCVEASC
601: GNDKDDNARK LANGSSFLEC GEASAGDLFC NSEMIKVDLE QFAGSNCTIV GGSQELVDDD KQGTSPETEH LKNGSAQNAK PGTWSGPRSS WKCDC

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.