Factsheet for VIT_11s0016g03040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0073g00320.t01	Wine grape	cytosol	6.52	66.1
Bra011388.1-P	Field mustard	nucleus	40.64	58.13
PGSC0003DMT400075574	Potato	nucleus	57.19	56.44
Solyc12g095890.1.1	Tomato	nucleus	56.69	55.85
GSMUA_Achr10P...	Banana	nucleus	60.7	52.23
Os02t0227400-01	Rice	extracellular	53.18	52.13
OQU76574	Sorghum	nucleus	59.53	51.22
Zm00001d036977_P001	Maize	nucleus	59.87	51.0
GSMUA_Achr6P14860_001	Banana	nucleus	57.19	50.74
VIT_09s0002g03380.t01	Wine grape	cytosol	61.87	48.94
HORVU7Hr1G088370.13	Barley	nucleus	59.36	48.9
TraesCS7B01G270600.4	Wheat	nucleus	59.2	48.83
TraesCS7D01G365600.4	Wheat	nucleus	59.2	48.76
KRH52804	Soybean	nucleus	59.53	48.63
TraesCS7A01G357100.1	Wheat	nucleus	59.36	48.63
KRH62113	Soybean	nucleus	59.03	48.49
Zm00001d053559_P007	Maize	mitochondrion	54.85	47.88
CDX68897	Canola	nucleus	58.03	47.86
CDX75292	Canola	nucleus	57.86	47.46
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	51.17	47.0
KXG29853	Sorghum	mitochondrion	54.35	46.56
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	52.84	46.27
CDX77017	Canola	nucleus	57.19	45.54
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	53.01	45.22
AT4G32850.8	Thale cress	nucleus	57.69	45.1
CDY35331	Canola	nucleus	56.86	44.62
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	52.01	44.56
GSMUA_Achr9P16270_001	Banana	nucleus	59.03	44.12
Bra034276.1-P	Field mustard	cytosol	56.86	44.1
Solyc08g066200.2.1	Tomato	nucleus	58.03	44.09
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	51.51	43.94
VIT_01s0011g04320.t01	Wine grape	nucleus	52.17	43.58
Zm00001d046255_P035	Maize	nucleus	59.03	42.79
AT2G25850.2	Thale cress	nucleus	56.02	41.88
VIT_05s0077g00650.t01	Wine grape	plastid	29.43	31.26

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100268088	wikigene:100268088	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590
ProteinID:CBI27991	ProteinID:CBI27991.3	UniProt:D7TBF6	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	EntrezGene:LOC100268088	wikigene:LOC100268088	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI00015C8E37	ArrayExpress:VIT_11s0016g03040	EnsemblPlantsGene:VIT_11s0016g03040	EnsemblPlants:VIT_11s0016g03040.t01	RefSeq:XP_002280350	RefSeq:XP_002280350.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:2446664..2449892

Molecular Weight (calculated)

68230.0 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.346

Length

598 amino acids

Sequence
(BLAST)

001: MENVKVRAKQ FGLTKPISYV KPTDFHIRRS FELEKVLWDG GVYQVEEEAR KREEIIEKLR VVVKSWVKQV TRWKGYTDKM VENANALIVT FGSYRLGVHG
101: PGSDIDTLCI GPSYVNREED FFIRLHNILI GMEGVSELLP IPHAHVPVMK FKFEGVSIDL LYASVSHLVV PDDLDISNES ILYEADEPTV RSLSGCRVAD
201: QILRLVPNVE HFRTTLRCLK FWAKRRGVYS NVTGFLGGVN LALLVARVCQ LYPNANPSML VSRFFRVYTQ WHWPNPVMLC PIEDKELGFP VWDPRRNPLD
301: RNHHMPIITP AYPNMNSSYS VSTSTLEAMM KQFHTANKIC NDIELNKSSW GALFEPFLFF RSYQNYLQVD ITATDADDLR AWKGWVESRL RQLTLKVERC
401: TIGKLLCVPC PREYVDTSRQ CCHCTYFMGL RKKPGVEVGE VIDIRVATQE FKEEIVNMFS FWTPGMEIHV SHVLKNQLPS YVFPDEYRKR SQSSKSINQQ
501: HQNKRKINSE MVDGKPSASG CMSGGMSNSS SQLKADMGSC KTGYKRRRLT PEEGSCEESK GLSVSESESE SDGLAKEKGS SLLQNALLKE VEVSENFL

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.