CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036977_P001	Maize	nucleus	94.53	93.59
TraesCS7B01G270600.4	Wheat	nucleus	82.59	79.17
TraesCS7D01G365600.4	Wheat	nucleus	82.16	78.65
TraesCS7A01G357100.1	Wheat	nucleus	82.45	78.49
HORVU7Hr1G088370.13	Barley	nucleus	81.87	78.37
Zm00001d046255_P035	Maize	nucleus	92.95	78.3
Bra011388.1-P	Field mustard	nucleus	41.58	69.14
PGSC0003DMT400075574	Potato	nucleus	57.55	66.01
Solyc12g095890.1.1	Tomato	nucleus	56.98	65.24
GSMUA_Achr10P...	Banana	nucleus	64.32	64.32
KXG29853	Sorghum	mitochondrion	62.45	62.18
GSMUA_Achr6P14860_001	Banana	nucleus	60.29	62.17
VIT_11s0016g03040.t01	Wine grape	nucleus	51.22	59.53
KRH62113	Soybean	nucleus	61.58	58.79
CDX68897	Canola	nucleus	61.01	58.48
KRH52804	Soybean	nucleus	61.58	58.47
CDX75292	Canola	nucleus	61.15	58.3
KXG27007	Sorghum	nucleus	44.17	56.23
CDX77017	Canola	nucleus	60.58	56.06
CDY35331	Canola	nucleus	60.58	55.25
AT4G32850.8	Thale cress	nucleus	60.58	55.03
GSMUA_Achr9P16270_001	Banana	nucleus	63.31	55.0
Bra034276.1-P	Field mustard	cytosol	60.43	54.47
Solyc08g066200.2.1	Tomato	nucleus	61.15	54.0
AT2G25850.2	Thale cress	nucleus	59.28	51.5
EER93704	Sorghum	cytosol	46.33	42.93
OQU92698	Sorghum	cytosol, plasma membrane, plastid	23.88	27.44
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	21.73	27.36

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1W0VTJ3	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C	EnsemblPlants:OQU76574	ProteinID:OQU76574	ProteinID:OQU76574.1
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	EnsemblPlantsGene:SORBI_3010G167900	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0009DC8ABC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:49617115..49624086

Molecular Weight (calculated)

77767.2 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.387

Length

695 amino acids

Sequence
(BLAST)

001: MASGSDPPKQ YGITKPLSLL GPVEADLQRT AELEKFLVEA GLYESPDESA RREEVLGKLD QIVKDWVKQL TSQRGYTDQM VEEANAVLFT FGSYRLGVHG
101: PGADIDTLCV GPSYVNREED FFIVLHGILA QTEDVTELQP VPDAHVPVMK FKFHGISIDL LYASVSLLVV PADLDISQGS VLYDVDEATV RSLNGCRVAD
201: QIIRLVPNIE NFRTTLRCLK YWAKRRGVYS NVTGFLGGVN WALLVARVCQ LYPNAVPSML VSRFFRVFTQ WQWPNPVMLC SIEEDEVGFP VWDPRKNPRD
301: RCHHMPIITP AYPCMNSSYN VSTSTLRVMV EQFQFGNKIC QEIEMNKASW SALFEPFQFF EAYKNYLQVD IIAEDDEDLR LWKGWVESRL RQLTLKIERD
401: TYGMLQCHPY PHEYADPSRQ CAHCAFFMGL SRKEGVKIQE GQQFDIRGTV DEFRHDINLY MFWKPGMELA VSHVRRKQIP AYVFPEGYKR PRPSRHVNHQ
501: SDKNDNEDGT VTQSPDSQLK RKHDSVGTDD IEPNRSAKRS SVSPVHPKNS PQSGSTGDET RCNNQIKRAP SDASGGSPAS PQASERSPDT IVSSPMCTTT
601: GAVCSGDAIS KHGVPLVENC TTPTVAVCTT LKRVAEKVVS ELVGSERLGS NNSAELLESM EKDVLAENVC FGGNGVTQGG LPEELEPNLR IEVVS

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.