Factsheet for PGSC0003DMT400075574

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095890.1.1	Tomato	nucleus	95.05	94.89
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	42.41	75.15
Bra011388.1-P	Field mustard	nucleus	46.37	67.22
GSMUA_Achr6P14860_001	Banana	nucleus	66.01	59.35
Os02t0227400-01	Rice	extracellular	59.74	59.34
KRH62113	Soybean	nucleus	71.29	59.34
GSMUA_Achr10P...	Banana	nucleus	67.99	59.28
KRH52804	Soybean	nucleus	71.29	59.02
OQU76574	Sorghum	nucleus	66.01	57.55
VIT_11s0016g03040.t01	Wine grape	nucleus	56.44	57.19
Zm00001d036977_P001	Maize	nucleus	65.51	56.55
CDX68897	Canola	nucleus	67.66	56.55
CDX75292	Canola	nucleus	67.66	56.24
Zm00001d053559_P007	Maize	mitochondrion	62.38	55.18
CDX77017	Canola	nucleus	67.82	54.73
TraesCS7B01G270600.4	Wheat	nucleus	65.35	54.62
HORVU7Hr1G088370.13	Barley	nucleus	65.35	54.55
TraesCS7D01G365600.4	Wheat	nucleus	65.35	54.55
TraesCS7A01G357100.1	Wheat	nucleus	65.68	54.52
CDY35331	Canola	nucleus	67.66	53.81
KXG29853	Sorghum	mitochondrion	61.55	53.44
AT4G32850.8	Thale cress	nucleus	67.16	53.2
Bra034276.1-P	Field mustard	cytosol	67.66	53.18
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	58.91	52.27
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	59.57	51.5
GSMUA_Achr9P16270_001	Banana	nucleus	67.49	51.12
AT2G25850.2	Thale cress	nucleus	67.16	50.88
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	58.58	50.86
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	58.09	50.21
Zm00001d046255_P035	Maize	nucleus	65.02	47.76
PGSC0003DMT400078394	Potato	nucleus	55.28	47.25
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	27.72	33.67
PGSC0003DMT400011757	Potato	nucleus	27.56	29.82

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:102597372	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	UniProt:M1CVE7	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	EnsemblPlantsGene:PGSC0003DMG400029391	PGSC:PGSC0003DMG400029391	EnsemblPlants:PGSC0003DMT400075574	PIRSF:PIRSF018425	PANTHER:PTHR10682
PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000295C50A	RefSeq:XP_006342511.1	RefSeq:XP_015162068.1	RefSeq:XP_015162069.1
RefSeq:XP_015162070.1	RefSeq:XP_015162071.1	SEG:seg	:	:	:

Description

Poly(A) polymerase beta [Source:PGSC_GENE;Acc:PGSC0003DMG400029391]

Coordinates

chr12:+:57714875..57721545

Molecular Weight (calculated)

69151.4 Da

IEP (calculated)

6.216

GRAVY (calculated)

-0.477

Length

606 amino acids

Sequence
(BLAST)

001: MVSSESLSES AAPPPMKYGV TKPLSLAGPT EADLQRNAEL EKFLRESVLY DSEEETARRE EVLRRLDEIV KQWVKQLTRQ RGYPDQMVED ANAIIVTFGS
101: YRLGVHGPGA DVDTLCVGPS YVNREEDFFI LLHDILAEME EVRELQPVPD AHVPVMKFKF QGISIDLLYA SITLLVIPED LDISDQSILY NVDGPTVRSL
201: NGCRVADQIL KLVPNAKHFR TTLRCLKFWA KRRGVYSNVT GFLGGVNWAL LVARICQFYP NAIPSMLVSR FFRVYTQWRW PNPVMLCPIE EDELGFLVWD
301: PRKNPKDRTH HMPIITPAYP CMNSSYNVSP STLRVMMDQF QIGNKICEDV ELNKAQWPAL FEHYFFFEAY KNYLQVEIVA ADNDDLLAWK GWVESRLRQL
401: TLKIERDTNG TLQCHPYPNE FVDMSKPCPH CAFFMGLQRQ KGVKVQEGQQ FDIRGTVDEF KQDVSMYSYW RPGMDIYVSH VPRREIPAYV FPDGCKRPRQ
501: SRNTTQHTPE KDAKGCMSSE EKRSKRKQET HTVDVQSDKL PKRASISPQD IGSVSPASVS SRSGGSSQII TPEESLHEVK TAGLQNRSSD DKSTEDTGEQ
601: KPCISE

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.