Factsheet for PGSC0003DMT400011757

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400054373
PGSC0003DMT400075788

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	PGSC0003DMT400054373	AT1G30460.1	16897494
AT3G06560.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT3G06560.1	PGSC0003DMT400075788	AT2G01730.1	16897494
AT3G06560.1	PGSC0003DMT400008250	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099180.1.1	Tomato	cytosol	75.18	96.78
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	66.43	74.55
AT3G06560.1	Thale cress	nucleus	49.29	54.44
VIT_05s0077g00650.t01	Wine grape	plastid	53.75	53.46
CDY24682	Canola	nucleus	45.71	52.35
CDY05277	Canola	nucleus	47.86	52.24
Bra029588.1-P	Field mustard	nucleus	47.32	51.56
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	48.21	48.47
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	12.32	47.59
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	12.68	44.65
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	40.18	44.29
HORVU0Hr1G029140.2	Barley	cytosol	35.89	43.79
HORVU0Hr1G035930.1	Barley	cytosol	35.89	43.79
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	38.04	42.77
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	40.71	42.22
Os07t0688500-00	Rice	cytosol	39.29	41.98
TraesCS2D01G095000.1	Wheat	cytosol	38.57	40.83
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	40.18	40.76
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	38.75	40.49
TraesCS4A01G123900.1	Wheat	nucleus	38.93	40.37
TraesCS4B01G180500.1	Wheat	nucleus	38.93	40.37
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	38.21	40.3
HORVU4Hr1G052840.1	Barley	plastid	38.93	40.22
TraesCS4D01G182000.1	Wheat	nucleus	38.57	40.0
Os03t0313300-01	Rice	mitochondrion	38.93	39.93
OQU92698	Sorghum	cytosol, plasma membrane, plastid	40.54	37.52
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	22.86	37.43
HORVU2Hr1G016100.3	Barley	cytosol	34.11	36.04
PGSC0003DMT400075574	Potato	nucleus	29.82	27.56
PGSC0003DMT400078394	Potato	nucleus	31.25	24.68

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:102598065	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:M1A038	InterPro:NuclTrfase_I-like_C
PFAM:PF04928	EnsemblPlantsGene:PGSC0003DMG400004615	PGSC:PGSC0003DMG400004615	EnsemblPlants:PGSC0003DMT400011757	PIRSF:PIRSF018425	PANTHER:PTHR10682
PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI000296340A	RefSeq:XP_006349957.1	SEG:seg	:	:

Description

Poly(A) polymerase [Source:PGSC_GENE;Acc:PGSC0003DMG400004615]

Coordinates

chr12:+:59946161..59950027

Molecular Weight (calculated)

63775.2 Da

IEP (calculated)

7.639

GRAVY (calculated)

-0.094

Length

560 amino acids

Sequence
(BLAST)

001: MEFDNFETQF IIDLIGAVNH PLSCRPTTQI GLANSNITQF RDFNQNPQIF LGFPPNPDVI LRMEIERSMS LLQVMVNEGL VPCGEEEMKR RNAIDKLKKI
101: VVEWVKTVTY QRGLPKKYLK FASGTILTYG SYGLGVYNSE SDIDALCVGP YFATIAEDFF IILHNMLASS PEVSEIHCVK DAKVPLMRFK FDGISIDLPY
201: ARLKVISIPE NVDVFNPFFL KNIDDTSWKS LSGVRANRSI LHLVPNIEVF QAVLRCIKLW AKRRGVYANL LGFFGGIHLA VLSAFICQRH PSASLSALIL
301: LLFKTFTLWP WPTPVILQDQ ITRPFTPTHD KVSWMPIQLP CSPYEFCHSN ITRSTFYKIR TEFLRGHMLT KDMLSPDFDW NILFEPFPYA RKYGLFVKIF
401: LSACDKDELG DWVGWVKSRF RCLLVKLEEL LGFCDPNPTE YADTDASEPN VIFYWGLPTG RADLINAELV EEYFLKSIDH GLNQVSTGTM KLSIVKAYQL
501: PKKADQLTAL ERKNSKTCWR VVDGNRKNTV PQPKYKPHCA ESAGDYLPTN ENPEFPSAGG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.