Factsheet for Bra029588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra006786.1-P
Bra010767.1-P
Bra014881.1-P
Bra022557.1-P
Bra026637.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Bra010767.1-P	AT1G30460.1	16897494
AT3G06560.1	Bra014881.1-P	AT1G30460.1	16897494
AT3G06560.1	Bra010767.1-P	AT1G30460.1	18479511
AT3G06560.1	Bra014881.1-P	AT1G30460.1	18479511
AT3G06560.1	Bra026637.1-P	AT2G01730.1	16897494
AT3G06560.1	Bra022557.1-P	AT5G51660.1	16897494
AT3G06560.1	Bra002677.1-P	AT5G58040.1	18479511
AT3G06560.1	Bra006786.1-P	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24682	Canola	nucleus	94.16	98.98
AT3G06560.1	Thale cress	nucleus	76.26	77.32
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	50.58	52.1
Solyc12g099180.1.1	Tomato	cytosol	43.77	51.72
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	48.05	51.57
VIT_05s0077g00650.t01	Wine grape	plastid	54.67	49.91
PGSC0003DMT400011757	Potato	nucleus	51.56	47.32
HORVU0Hr1G029140.2	Barley	cytosol	40.47	45.32
HORVU0Hr1G035930.1	Barley	cytosol	40.47	45.32
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	12.45	44.14
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	42.61	43.98
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	47.47	43.81
TraesCS2D01G095000.1	Wheat	cytosol	42.41	41.21
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	42.41	41.05
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	12.65	40.88
Os07t0688500-00	Rice	cytosol	41.63	40.84
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	40.66	38.99
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	40.66	38.7
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	38.13	38.58
Os03t0313300-01	Rice	mitochondrion	40.86	38.46
HORVU2Hr1G016100.3	Barley	cytosol	38.91	37.74
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	40.47	37.68
HORVU4Hr1G052840.1	Barley	plastid	39.49	37.45
TraesCS4A01G123900.1	Wheat	nucleus	38.91	37.04
TraesCS4B01G180500.1	Wheat	nucleus	38.72	36.85
TraesCS4D01G182000.1	Wheat	nucleus	38.52	36.67
OQU92698	Sorghum	cytosol, plasma membrane, plastid	39.69	33.72
Bra011388.1-P	Field mustard	nucleus	24.9	30.62
Bra024894.1-P	Field mustard	nucleus	31.13	23.81
Bra031010.1-P	Field mustard	nucleus	31.13	23.22
Bra034276.1-P	Field mustard	cytosol	34.05	22.7
Bra016573.1-P	Field mustard	nucleus	29.96	22.25

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EnsemblPlantsGene:Bra029588	EnsemblPlants:Bra029588.1
EnsemblPlants:Bra029588.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:M4ELC0
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI000254818A	:	:	:	:	:

Description

AT3G06560 (E=3e-235) | polynucleotide adenylyltransferase/ protein binding

Coordinates

chrA05:-:23122531..23125001

Molecular Weight (calculated)

58414.4 Da

IEP (calculated)

8.644

GRAVY (calculated)

-0.188

Length

514 amino acids

Sequence
(BLAST)

001: MRRGGERYKG LPPYMAEIEE ECSVSLRQLM VNEGLIPSPE DDKKRRSVIH MLQRIVVRWI KIVAWKRRLP QHHINATNAT IIPYGSYGLG VHGSDSDIDA
101: LCIGPFFATI AEDFFIDLRD LLKTRSEVSE VHCVKDAKVP LIRFKFDGIL VDLPYAQLRV LSIPNNVDVL NPFFLRDINE TSWRSLSGVR ANQCILQIVP
201: SVELFQSLLR CVKLWAKRRG VYGNLNGFLG GVHMAILAAF VCGYNPNATL SSLVASFFST FAYWQWPMPV VLLRDAFAAT GSPPGLMPIQ LPCGGRQYCN
301: SNVTRSTYCK IMSEFHRGNH LMKGYLKHGF NWNSLFEPYP YATTYAWFVK IHLSAANVED LSDWVGWVKS RFRSLLIKIE EVFGLCDPNP TEHLEACEKQ
401: PNIVYYWGLH LRSINVSDIE PVETDFLKNV NNSGSFQGSV GGIQLSVVQA SQLPKNVECD TSNRNKKVTR TCWRVRDDKQ CKDKPVYSRH LPGYVVGYEK
501: MNNNREAEST DVKC

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.