Factsheet for Zm00001d028920_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d033843_P007
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d044213_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT3G06560.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT3G06560.1	Zm00001d033843_P007	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	86.85	92.32
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	22.78	84.83
OQU92698	Sorghum	cytosol, plasma membrane, plastid	91.85	81.98
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.52	79.87
TraesCS4D01G182000.1	Wheat	nucleus	70.19	70.19
TraesCS4A01G123900.1	Wheat	nucleus	69.81	69.81
TraesCS4B01G180500.1	Wheat	nucleus	69.63	69.63
HORVU4Hr1G052840.1	Barley	plastid	68.7	68.45
Os03t0313300-01	Rice	mitochondrion	69.07	68.31
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	54.44	54.85
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	46.67	45.24
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	41.48	44.89
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	39.63	44.68
Solyc12g099180.1.1	Tomato	cytosol	35.19	43.68
AT3G06560.1	Thale cress	nucleus	40.93	43.59
CDY24682	Canola	nucleus	38.15	42.13
CDY05277	Canola	nucleus	38.7	40.74
PGSC0003DMT400011757	Potato	nucleus	42.22	40.71
VIT_05s0077g00650.t01	Wine grape	plastid	42.41	40.67
Bra029588.1-P	Field mustard	nucleus	38.7	40.66
Zm00001d031424_P001	Maize	cytosol	10.0	31.58
Zm00001d040140_P001	Maize	cytosol	10.56	31.49
Zm00001d044377_P001	Maize	cytosol	8.89	30.97
Zm00001d016073_P001	Maize	cytosol	10.56	30.0
Zm00001d002505_P001	Maize	nucleus	27.59	26.99
Zm00001d036977_P001	Maize	nucleus	30.56	23.5
Zm00001d053559_P007	Maize	mitochondrion	29.81	23.5
Zm00001d013599_P016	Maize	nucleus	28.33	20.4
Zm00001d033448_P004	Maize	nucleus	27.78	20.13
Zm00001d046255_P035	Maize	nucleus	30.19	19.76

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100285931	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6K0U3
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
InterPro:NuclTrfase_I-like_C	ProteinID:ONL97396.1	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF28	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0008457788	EnsemblPlantsGene:Zm00001d028920
EnsemblPlants:Zm00001d028920_P004	EnsemblPlants:Zm00001d028920_T004	SEG:seg	:	:	:

Description

Nuclear poly(A) polymerase 3

Coordinates

chr1:-:51491053..51497733

Molecular Weight (calculated)

61212.0 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.009

Length

540 amino acids

Sequence
(BLAST)

001: MVLDHAIRGS AARRAETQTL APVLLMGPPP PPPIPPTTGM YLPGPPPPGT LLPHPMHMAL PREVIIYMDE CRSRSLLKFI SDAGIVPSLE DERRRERVVR
101: ELGKIVMDWA KRVAYEQGNW HWIASATVLT FGSYALGFST LKAYGPESDI DVLCIGPCIA SLQHHFFVVL RQMLEGRPEV SELHSIEGAK VPLMRFKFNG
201: ILVDFPYVQL PVINAAEAMH AFDPHVLENV DGPSWRCLSG VRANRQIIQL VPNMKKFQYL LRCLKLWARK RGLHCHLLGF FAGIHLAILA AYVCRRHPNA
301: SINTLLSLFF DIFVHWPWPL PVSLLDPPVP CRGPDGCSLM PIMLPCIPPE FCSSSTTEST FSKIKEELWR GYALSKDTRS TDFNWSWLFA PFPYGARYKC
401: FLRIVLSAPM GEELRDWVGW VKSRFRNLLL KLESLGVYCD PDPSEQVDHT ITDPNVVFFW GLIYRRNIQI CISSLKEDFM KSVCNNIYGK EKCAHSDITM
501: SIVGPPQLPK SVFDLSVYSE KLPQHMMGHQ LMKQNYNAVS

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.