Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G060590.1 | Barley | cytosol | 31.72 | 89.39 |
| EES01080 | Sorghum | cytosol | 79.57 | 79.57 |
| TraesCS5D01G210400.1 | Wheat | cytosol | 71.51 | 72.28 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 71.51 | 72.28 |
| HORVU5Hr1G060570.5 | Barley | cytosol | 72.04 | 71.91 |
| Os09t0397900-01 | Rice | cytosol | 72.04 | 71.91 |
| VIT_01s0011g05780.t01 | Wine grape | cytosol | 12.01 | 71.28 |
| TraesCS5B01G202500.1 | Wheat | cytosol | 58.06 | 70.59 |
| KRH70353 | Soybean | cytosol | 63.08 | 66.17 |
| Solyc04g008030.1.1 | Tomato | cytosol | 62.9 | 54.08 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 58.6 | 53.34 |
| Bra026637.1-P | Field mustard | cytosol | 58.24 | 52.85 |
| CDY66642 | Canola | cytosol | 58.24 | 52.85 |
| CDY09421 | Canola | cytosol | 58.24 | 52.85 |
| GSMUA_Achr3P07540_001 | Banana | cytosol | 58.06 | 49.17 |
| PGSC0003DMT400075788 | Potato | extracellular | 20.61 | 32.67 |
| Zm00001d034876_P001 | Maize | plastid | 31.72 | 25.39 |
| Zm00001d012831_P001 | Maize | plastid | 30.82 | 24.78 |
| Zm00001d044552_P006 | Maize | cytosol, plasma membrane | 19.71 | 14.36 |
Protein Annotations
| EntrezGene:103651494 | MapMan:16.2.1.2.4 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | UniProt:A0A1D6NJL4 | InterPro:Beta_Casp |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 | GO:GO:0030154 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas |
| ProteinID:ONM40452.1 | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF16661 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF37 |
| InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 | SUPFAM:SSF56281 | UniParc:UPI0002207F6F |
| EnsemblPlantsGene:Zm00001d044213 | EnsemblPlants:Zm00001d044213_P001 | EnsemblPlants:Zm00001d044213_T001 | : | : | : |
Description
Cleavage and polyadenylation specificity factor subunit 3-II
Coordinates
chr3:-:221965077..221974763
Molecular Weight (calculated)
62242.6 Da
IEP (calculated)
7.185
GRAVY (calculated)
-0.156
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIECLVLGA GQEVGKSCVV VTIGGKRVMF DCGMHMGYHD DRHYPDFARA LAAWGAPDFT TAISCVVITH FHMDHIGALP YFTEVCGYHG PIYMTYPTKA
101: LAPFMLEDYR KVTMGQRGEE KQYSYEDILR CMKKVTPMDL KQTVQVDKDL VIRAYYAGHV IGAAMIYAKV GDAAMVYTGD YNMTPDRHLG AAQIDRLKLD
201: VLITESTYAK SIRDSKPARE REFLKAVHKC VSGGGKVLIP TFALGRAQEL CMLLDDYWER MGLKVPIYFS AGLTIQANVY YKMLIGWTSQ KIKDSHTVHN
301: PFDFKHVCHF ERSFINNPGP CVLFATPGMI TGGFSLEAFK KWAPSEKNLV TLPGYCVSGT IGHKLMCGKP TRVDYEDTHI DVRCQIHQLA FSPHTDSKGI
401: MDLTEFLSPK NVILVHGEKP QMAFLKERIE SELGMPCYYP GNNESVSIPT TQNLKMSATE RFITGCAVEQ GKRSLHKRNL IYGTGLSEEI GSDEAAGEGV
501: LLMQKHKSPK ILCEDELLEV LGMGRHLVQF EPMVSRIVAA VESELQRAKA ADLDNDGK
101: LAPFMLEDYR KVTMGQRGEE KQYSYEDILR CMKKVTPMDL KQTVQVDKDL VIRAYYAGHV IGAAMIYAKV GDAAMVYTGD YNMTPDRHLG AAQIDRLKLD
201: VLITESTYAK SIRDSKPARE REFLKAVHKC VSGGGKVLIP TFALGRAQEL CMLLDDYWER MGLKVPIYFS AGLTIQANVY YKMLIGWTSQ KIKDSHTVHN
301: PFDFKHVCHF ERSFINNPGP CVLFATPGMI TGGFSLEAFK KWAPSEKNLV TLPGYCVSGT IGHKLMCGKP TRVDYEDTHI DVRCQIHQLA FSPHTDSKGI
401: MDLTEFLSPK NVILVHGEKP QMAFLKERIE SELGMPCYYP GNNESVSIPT TQNLKMSATE RFITGCAVEQ GKRSLHKRNL IYGTGLSEEI GSDEAAGEGV
501: LLMQKHKSPK ILCEDELLEV LGMGRHLVQF EPMVSRIVAA VESELQRAKA ADLDNDGK
001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
Arabidopsis Description
CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.