Factsheet for Zm00001d012831_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034876_P001	Maize	plastid	95.39	94.98
EER90498	Sorghum	plastid	95.1	94.96
Os03t0852900-01	Rice	plastid	90.06	89.29
HORVU5Hr1G123370.3	Barley	cytosol	86.46	89.02
TraesCS4A01G324800.1	Wheat	cytosol	88.76	89.02
TraesCS5D01G555600.1	Wheat	cytosol	88.62	88.87
TraesCS5B01G537400.1	Wheat	cytosol	88.47	88.73
TraesCS5D01G367600.1	Wheat	cytosol	87.03	87.16
TraesCS5B01G360900.1	Wheat	cytosol	86.89	87.01
TraesCS5B01G536400.1	Wheat	cytosol	81.99	83.43
TraesCS4A01G336600.1	Wheat	cytosol	70.32	81.06
VIT_12s0035g00190.t01	Wine grape	cytosol	79.39	79.39
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	76.37	79.22
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	73.34	78.91
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	78.1	78.21
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	79.54	78.19
CDY03781	Canola	cytosol	75.36	75.69
Bra031460.1-P	Field mustard	cytosol	75.36	75.36
CDY68459	Canola	cytosol	75.36	75.36
AT1G61010.4	Thale cress	cytosol	74.93	75.04
VIT_12s0035g00170.t01	Wine grape	plastid	19.88	75.0
KRH26351	Soybean	nucleus	73.92	74.46
PGSC0003DMT400001821	Potato	cytosol	73.78	73.67
VIT_12s0035g00160.t01	Wine grape	cytosol	15.56	72.48
KRH44086	Soybean	cytosol	71.18	71.8
Solyc07g049480.2.1	Tomato	nucleus	73.34	69.63
CDY50214	Canola	cytosol	21.33	62.18
Zm00001d044213_P001	Maize	cytosol	24.78	30.82
Zm00001d044552_P006	Maize	cytosol, plasma membrane	18.16	16.45

Protein Annotations

EntrezGene:100285156	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	ProteinID:AQK61548.1
UniProt:B6U1D4	EMBL:BT069293	InterPro:Beta_Casp	InterPro:CPSF73-100_C	EMBL:EU971049	InterPro:IPR036866
InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203
PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SMART:SM01098
SUPFAM:SSF56281	UniParc:UPI000182EADA	EnsemblPlantsGene:Zm00001d012831	EnsemblPlants:Zm00001d012831_P001	EnsemblPlants:Zm00001d012831_T001	SEG:seg

Description

Cleavage and polyadenylation specificity factor subunit 3-I

Coordinates

chr5:+:953000..956110

Molecular Weight (calculated)

77003.8 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.077

Length

694 amino acids

Sequence
(BLAST)

001: MAASAAAPSG APPAGKRPAS SGREGDQMVI TPLGAGSEVG RSCVHMTFKG RTVLFDCGIH PAYTGMAALP YFDEIDPSAI DVLLITHFHL DHAASLPYFL
101: EKTTFKGRVF MTHATKAIYK LLLSDYVKVS KVSVEDMLFD ESDIARSMEK IEVIDFHQTL EVNGIRFWCY TAGHVLGAAM FMVDIAGVRI LYTGDYSREE
201: DRHLRAAELP QFSPDICIIE STYGVQQHQP RIVREKRFTE VIHNTVSQGG RVLIPAFALG RAQELLLILD EYWSKHPELH KIPIYYASPL AKRCMAVYQT
301: YINSMNERIR NQFAQSNPFH FKHIESLNSI DNFHDVGPSV VMASPSGLQS GLSRQLFDKW CTDKRNACVI PGYVVEGTLA KTIINEPREV ALANGLTAPL
401: HMSVHYISFS AHADFPQTSN FLDELRPPNI ILVHGEANEM SRLKQKLITQ FDGTNTKIVS PKNCQSVEMY FTCEKMAKTI GRLAEKVPEA GESSGGLLVK
501: KGFTYQIMAP EDLRVFTQLS TANIMQRIAV PYCGSFEVIR YRLEQIYESV EPAAEESDVP ALIVHGRVTV RLDSESYVTL QWLSDPISDM VSDSVVAMIL
601: NVGREGPKVV PVEGAVKTKE ETAQKVVYAL MASLFGDVKV VEEGRLVISV DGNVAHLDGR SGYVECENAT LKERIKTAFR RIQGAVRPIP LASS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.