Factsheet for Os03t0852900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G123370.3	Barley	cytosol	88.43	91.84
EER90498	Sorghum	plastid	90.43	91.08
TraesCS5D01G555600.1	Wheat	cytosol	89.86	90.9
Zm00001d034876_P001	Maize	plastid	90.43	90.82
TraesCS4A01G324800.1	Wheat	cytosol	89.71	90.75
TraesCS5B01G537400.1	Wheat	cytosol	89.57	90.61
Zm00001d012831_P001	Maize	plastid	89.29	90.06
TraesCS5B01G360900.1	Wheat	cytosol	88.71	89.61
TraesCS5D01G367600.1	Wheat	cytosol	88.71	89.61
TraesCS5B01G536400.1	Wheat	cytosol	82.71	84.9
TraesCS4A01G336600.1	Wheat	cytosol	71.57	83.22
VIT_12s0035g00190.t01	Wine grape	cytosol	80.86	81.56
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	75.0	81.4
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	77.71	81.32
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	82.0	81.3
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	79.57	80.38
VIT_12s0035g00170.t01	Wine grape	plastid	20.71	78.8
CDY03781	Canola	cytosol	77.43	78.44
Bra031460.1-P	Field mustard	cytosol	77.57	78.24
CDY68459	Canola	cytosol	77.57	78.24
KRH26351	Soybean	nucleus	77.0	78.23
AT1G61010.4	Thale cress	cytosol	76.43	77.2
PGSC0003DMT400001821	Potato	cytosol	75.14	75.68
KRH44086	Soybean	cytosol	73.29	74.56
VIT_12s0035g00160.t01	Wine grape	cytosol	15.71	73.83
Solyc07g049480.2.1	Tomato	nucleus	74.71	71.55
CDY50214	Canola	cytosol	22.0	64.71
Os09t0397900-01	Rice	cytosol	26.29	32.92
Os09t0569400-01	Rice	cytosol	19.0	18.02

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:4334816	ProteinID:AAO20067.1
ProteinID:AAO66552.1	ProteinID:ABF99946.1	ProteinID:BAF13842.1	ProteinID:BAS87408.1	InterPro:Beta_Casp	InterPro:CPSF73-100_C
ProteinID:EAZ29340.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016180	InterPro:IPR036866	InterPro:Metallo-B-lactamas
EnsemblPlantsGene:Os03g0852900	EnsemblPlants:Os03t0852900-01	PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718
PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	UniProt:Q84JJ2	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849
SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI00000027A3	RefSeq:XP_015632213.1	SEG:seg

Description

Similar to Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit). (Os03t0852900-01)

Coordinates

chr3:-:35908721..35911694

Molecular Weight (calculated)

77818.5 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.121

Length

700 amino acids

Sequence
(BLAST)

001: MASSVAAAAA PTAGGPPGKR QASGGREGDQ LIITPLGAGN EVGRSCVYMS FKGRTVLFDC GIHPAYSGMA ALPYFDEIDP STIDVLLITH FHLDHAASLP
101: YFLEKTTFKG RVFMTHATKA IYRLLLSDYV KVSKVSVEDM LFDEQDILRS MDKIEVIDFH QTLEVNGIRF WCYTAGHVLG AAMFMVDIAG VRVLYTGDYS
201: REEDRHLKAA ELPQFSPDIC IIESTYGVQQ HQPRHVREKR FTDVIHTTVS QGGRVLIPAF ALGRAQELLL ILDEYWANHP ELHKIPIYYA SPLAKKCMAV
301: YQTYINSMNE RIRNQFAQSN PFHFKHIESL NSIDNFHDVG PSVVMASPGG LQSGLSRQLF DKWCTDKKNS CVIPGYVVEG TLAKTIINEP REVTLANGLT
401: APLHMQVHYI SFSAHADFPQ TSTFLDELQP PNIVLVHGEA NEMSRLKQKL ISQFDGTNIK VVNPKNCQSV EMYFSSEKMA KTIGRLAEKV PEAGESVNGL
501: LVKKGFTYQI MAPEDLRVYT QLSTANITQR IAVPYSGSFE VIKYRLKQIY ESVESSTEES DVPTLIVHER VTIRLESESY VTLQWSSDPI SDMVSDSVVA
601: MVLNIGREGP KVVPVEEAVK TQEETERVAQ KVVYALMVSL FGDVKVAEEG KLVISVDGQV AHLDGRSGGV ECENATLRER IKTAFRRIQG AVRPIPLISS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.