Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031460.1-P | Field mustard | cytosol | 99.57 | 99.14 |
| CDY68459 | Canola | cytosol | 99.57 | 99.14 |
| AT1G61010.4 | Thale cress | cytosol | 94.21 | 93.94 |
| CDY50214 | Canola | cytosol | 30.54 | 88.66 |
| KRH26351 | Soybean | nucleus | 80.75 | 80.99 |
| KRH44086 | Soybean | cytosol | 79.02 | 79.36 |
| HORVU5Hr1G123370.3 | Barley | cytosol | 77.13 | 79.08 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 73.37 | 78.6 |
| PGSC0003DMT400001821 | Potato | cytosol | 78.73 | 78.27 |
| Os03t0852900-01 | Rice | plastid | 78.44 | 77.43 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 20.55 | 77.17 |
| TraesCS5D01G555600.1 | Wheat | cytosol | 77.28 | 77.17 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 77.28 | 77.17 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 77.28 | 77.17 |
| Zm00001d034876_P001 | Maize | plastid | 77.57 | 76.9 |
| EER90498 | Sorghum | plastid | 76.99 | 76.55 |
| TraesCS5D01G367600.1 | Wheat | cytosol | 76.12 | 75.9 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 75.69 | 75.47 |
| Zm00001d012831_P001 | Maize | plastid | 75.69 | 75.36 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 16.06 | 74.5 |
| Solyc07g049480.2.1 | Tomato | nucleus | 78.44 | 74.14 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 71.78 | 72.73 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 61.36 | 70.43 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 67.44 | 69.66 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 70.91 | 69.41 |
| CDY09421 | Canola | cytosol | 26.34 | 29.59 |
| CDY66642 | Canola | cytosol | 26.19 | 29.43 |
| CDX88053 | Canola | cytosol | 19.25 | 18.0 |
| CDX80392 | Canola | cytosol | 19.1 | 17.86 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | EnsemblPlants:CDY03781 |
| ProteinID:CDY03781 | ProteinID:CDY03781.1 | InterPro:CPSF73-100_C | EnsemblPlantsGene:GSBRNA2T00117160001 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas |
| PFAM:PF00753 | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF11718 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 |
| InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 | SMART:SM01098 | SUPFAM:SSF56281 |
| UniParc:UPI0004EDAD02 | SEG:seg | : | : | : | : |
Description
BnaC01g28980D
Coordinates
chrLK031946:-:287882..290680
Molecular Weight (calculated)
77161.9 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.111
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSLKRREQ QPMSREGDQL IVTPLGAGNE VGRSCVYMSF RGKTILFDCG INPAYSGMAA LPYFDEIDPS TIDVLLITHF HLDHAASLPY FLEKTTFKGR
101: VFMTHATKAI YKLLLTDYVK VSKVSVEDML FDEHDINKSM DKIEVIDFHQ TVEVNGIKFW CYTAGHVLGA AMFMVDIAGV RILYTGDYSR EEDRHLRAAE
201: LPQFSPDICI IESTSGVQLH QSRHIREKRF TDVIHSTVAQ GGRVLIPAFA LGRAQELLLI LDEYWANHPD LHNIPIYYAS PLAKKCMAVY QTYILSMNDR
301: IRNQFANSNP FVFKHISALN SIDDFRDVGP SVVMASPGGL QSGFSRQLFD IWCSDKRNAC IIPGYMVEGT LAKTIINEPK EVTLMNGLTA PLNMQVHYIS
401: FSAHADYAQT STFLKELMPP NIILVHGEAN EMMRLKQKLF TEFPDGNTRI MNPKNCESVE MYFNSEKMAK TIGRLAEKTP DVGDSVSGIL VKKGFAYQIM
501: APDDLHVFSQ LSTATVTQRI TIPFSGAFGV ITHRLGKIFE SVESSTDEET GLPALKVHER VTVKQESEKH ISLQWSSDPI SDMVSDSIVA LVLNISREVP
601: KIVAEEEVAV KSEEENGKKV EKVIYALLVS LFGDVKLGEN GKLVISVDGN VAHLDKESGD VEGEHEGLKE RVRVAFHRIQ SAVKPIPLSA E
101: VFMTHATKAI YKLLLTDYVK VSKVSVEDML FDEHDINKSM DKIEVIDFHQ TVEVNGIKFW CYTAGHVLGA AMFMVDIAGV RILYTGDYSR EEDRHLRAAE
201: LPQFSPDICI IESTSGVQLH QSRHIREKRF TDVIHSTVAQ GGRVLIPAFA LGRAQELLLI LDEYWANHPD LHNIPIYYAS PLAKKCMAVY QTYILSMNDR
301: IRNQFANSNP FVFKHISALN SIDDFRDVGP SVVMASPGGL QSGFSRQLFD IWCSDKRNAC IIPGYMVEGT LAKTIINEPK EVTLMNGLTA PLNMQVHYIS
401: FSAHADYAQT STFLKELMPP NIILVHGEAN EMMRLKQKLF TEFPDGNTRI MNPKNCESVE MYFNSEKMAK TIGRLAEKTP DVGDSVSGIL VKKGFAYQIM
501: APDDLHVFSQ LSTATVTQRI TIPFSGAFGV ITHRLGKIFE SVESSTDEET GLPALKVHER VTVKQESEKH ISLQWSSDPI SDMVSDSIVA LVLNISREVP
601: KIVAEEEVAV KSEEENGKKV EKVIYALLVS LFGDVKLGEN GKLVISVDGN VAHLDKESGD VEGEHEGLKE RVRVAFHRIQ SAVKPIPLSA E
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.