Factsheet for Zm00001d034876_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90498	Sorghum	plastid	96.7	96.98
Zm00001d012831_P001	Maize	plastid	94.98	95.39
HORVU5Hr1G123370.3	Barley	cytosol	88.52	91.54
TraesCS5D01G555600.1	Wheat	cytosol	90.24	90.9
TraesCS4A01G324800.1	Wheat	cytosol	90.24	90.9
TraesCS5B01G537400.1	Wheat	cytosol	90.1	90.75
Os03t0852900-01	Rice	plastid	90.82	90.43
TraesCS5D01G367600.1	Wheat	cytosol	88.67	89.18
TraesCS5B01G360900.1	Wheat	cytosol	88.52	89.03
TraesCS5B01G536400.1	Wheat	cytosol	82.5	84.31
TraesCS4A01G336600.1	Wheat	cytosol	71.31	82.56
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	75.18	81.24
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	77.47	80.72
VIT_12s0035g00190.t01	Wine grape	cytosol	80.2	80.55
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	80.92	79.89
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	79.2	79.65
CDY03781	Canola	cytosol	76.9	77.57
Bra031460.1-P	Field mustard	cytosol	77.19	77.52
CDY68459	Canola	cytosol	77.19	77.52
KRH26351	Soybean	nucleus	75.75	76.63
AT1G61010.4	Thale cress	cytosol	76.18	76.62
VIT_12s0035g00170.t01	Wine grape	plastid	20.09	76.09
PGSC0003DMT400001821	Potato	cytosol	75.18	75.4
VIT_12s0035g00160.t01	Wine grape	cytosol	15.78	73.83
KRH44086	Soybean	cytosol	72.45	73.4
Solyc07g049480.2.1	Tomato	nucleus	75.04	71.55
CDY50214	Canola	cytosol	22.24	65.13
Zm00001d044213_P001	Maize	cytosol	25.39	31.72
Zm00001d044552_P006	Maize	cytosol, plasma membrane	17.65	16.06

Protein Annotations

EntrezGene:100279987	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	UniProt:B8A148
EMBL:BT055290	InterPro:Beta_Casp	InterPro:CPSF73-100_C	InterPro:IPR036866	InterPro:Metallo-B-lactamas	ProteinID:ONM11662.1
PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11
InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281
UniParc:UPI000191786A	EnsemblPlantsGene:Zm00001d034876	EnsemblPlants:Zm00001d034876_P001	EnsemblPlants:Zm00001d034876_T001	SEG:seg	:

Description

Cleavage and polyadenylation specificity factor subunit 3-I

Coordinates

chr1:-:304508433..304511777

Molecular Weight (calculated)

77416.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.120

Length

697 amino acids

Sequence
(BLAST)

001: MASSAAAPSG APPAAKRPAS SGREGDQMVV TPLGAGSEVG RSCVHMTFKG RTVLFDCGIH PAYSGMAALP YFDEIDPSAI DVLLITHFHL DHAASLPYFL
101: EKTTFKGRVF MTHATKAIYK LLLSDYVKVS KVSVEDMLYD ESDIARSMDK IEVIDFHQTL EVNGIRFWCY TAGHVLGAAM FMVDIAGVRI LYTGDYSREE
201: DRHLRAAELP QFSPDICIIE STYGVQQHQP RIIREKRFTE VIHNTVSQGG RVLIPAFALG RAQELLLILD EYWSKHPELH KIPIYYASPL AKRCMAVYQT
301: YINSMNERIR NQFAQSNPFH FKHIESLNSI DNFHDVGPSV VMASPGGLQS GLSRQLFDKW CTDKKNACVI PGYVVEGTLA KTIINEPREV TLANGLTAPL
401: HMSVHYISFS AHADFPQTSN FLDELRPPNI ILVHGEANEM SRLKQKLITQ FDGTNTKIVS PKNCQSVEMY FTCEKMAKTI GRLAEQVPEG GESSSGLLVK
501: KGFTYQIMAP EDLRVFTQLS TANIIQRIAV PYSGSFEVIR YRLKQIYESV ESATEESDVP TLIVHERVTV RLDSESYVTL QWSSDPISDM VSDSVVAMVL
601: NIGREGPKVV PVEEAVKTKE ETEKAALKVV YALMTSLFGD VKVAEEGKFV ISVDGNVAHL DGRSGDVECE NATLKERIKT AFRRIQGAVR PIPLSAS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.