Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G555600.1 | Wheat | cytosol | 99.13 | 99.13 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 99.13 | 99.13 |
| HORVU5Hr1G123370.3 | Barley | cytosol | 95.52 | 98.07 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 93.79 | 93.65 |
| Zm00001d034876_P001 | Maize | plastid | 90.75 | 90.1 |
| EER90498 | Sorghum | plastid | 90.46 | 90.07 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 88.73 | 90.03 |
| Os03t0852900-01 | Rice | plastid | 90.61 | 89.57 |
| Zm00001d012831_P001 | Maize | plastid | 88.73 | 88.47 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 76.59 | 82.17 |
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 81.07 | 80.84 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 80.06 | 79.94 |
| CDY03781 | Canola | cytosol | 77.17 | 77.28 |
| AT1G61010.4 | Thale cress | cytosol | 77.31 | 77.2 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 20.52 | 77.17 |
| Bra031460.1-P | Field mustard | cytosol | 77.31 | 77.09 |
| CDY68459 | Canola | cytosol | 77.31 | 77.09 |
| KRH26351 | Soybean | nucleus | 76.45 | 76.78 |
| PGSC0003DMT400001821 | Potato | cytosol | 75.14 | 74.82 |
| KRH44086 | Soybean | cytosol | 73.99 | 74.42 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 15.9 | 73.83 |
| Solyc07g049480.2.1 | Tomato | nucleus | 75.29 | 71.27 |
| CDY50214 | Canola | cytosol | 22.54 | 65.55 |
| TraesCS5B01G202500.1 | Wheat | cytosol | 20.09 | 30.28 |
| TraesCS5B01G462500.2 | Wheat | cytosol | 17.34 | 16.24 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | InterPro:CPSF73-100_C |
| InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF00753 | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF11718 |
| PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 |
| SMART:SM01098 | SUPFAM:SSF56281 | EnsemblPlantsGene:TraesCS5B01G537400 | EnsemblPlants:TraesCS5B01G537400.1 | TIGR:cd16292 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:693202650..693206318
Molecular Weight (calculated)
76973.5 Da
IEP (calculated)
6.320
GRAVY (calculated)
-0.127
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAATAPAA GKRPATGGRE GDQMVITPLG AGSEVGRSCV HMTFKGRTVL FDCGIHPAYS GMAALPYFDE IDPSAIDVLL VTHFHLDHAA SLPYFLEKTT
101: FKGRVFMTHA TKAIYRLLLS DYVKVSKVSV EDMLFDEQDI IRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRILYTG DYSREEDRHL
201: KAAEIPQFSP DICIIESTYG VQQHQPRHVR EKRFTDAIHN TVSQGGRVLI PAFALGRAQE LLLILDEYWS NHPELHKIPI YYASPLAKKC MAVYQTYINS
301: MNERIRNQFA QSNPFHFKHI DPLNSIDNFH DVGPSVVMAS PGSLQSGLSR QLFDKWCTDK KNTCVIPGYA VEGSLAKTII NEPREVTLAN GLTAPLNMQI
401: FYISFSAHAD FPQTSGFLEE LRPPNIILVH GEANEMGRLK QKLITQFDGT NTKIVSPKNC QSVEMYFSSE KMAKTIGRLA EKVPEVGDTV SGLLVKKGFT
501: YQIMAPEDLR VYTQLSTANI TQRIAVPYSG SFEVVKYRLK QIYESVESST EEDVPVLTVH ERVAIRLDSE SYVTLQWSSD PISDMVSDSV VAMILNIGRE
601: GPKVVPIEEA VKTEEETEKV ARKVVYSLMV SLFGDVKVAE EGKLVITVDG DVAHLDGRSG DVECENAGLK ERIKTAFRRI QGAVRPIPLS AS
101: FKGRVFMTHA TKAIYRLLLS DYVKVSKVSV EDMLFDEQDI IRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRILYTG DYSREEDRHL
201: KAAEIPQFSP DICIIESTYG VQQHQPRHVR EKRFTDAIHN TVSQGGRVLI PAFALGRAQE LLLILDEYWS NHPELHKIPI YYASPLAKKC MAVYQTYINS
301: MNERIRNQFA QSNPFHFKHI DPLNSIDNFH DVGPSVVMAS PGSLQSGLSR QLFDKWCTDK KNTCVIPGYA VEGSLAKTII NEPREVTLAN GLTAPLNMQI
401: FYISFSAHAD FPQTSGFLEE LRPPNIILVH GEANEMGRLK QKLITQFDGT NTKIVSPKNC QSVEMYFSSE KMAKTIGRLA EKVPEVGDTV SGLLVKKGFT
501: YQIMAPEDLR VYTQLSTANI TQRIAVPYSG SFEVVKYRLK QIYESVESST EEDVPVLTVH ERVAIRLDSE SYVTLQWSSD PISDMVSDSV VAMILNIGRE
601: GPKVVPIEEA VKTEEETEKV ARKVVYSLMV SLFGDVKVAE EGKLVITVDG DVAHLDGRSG DVECENAGLK ERIKTAFRRI QGAVRPIPLS AS
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.