Factsheet for GSMUA_Achr6P00420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00190.t01	Wine grape	cytosol	84.96	78.96
VIT_12s0035g00170.t01	Wine grape	plastid	22.48	78.8
HORVU5Hr1G123370.3	Barley	cytosol	81.55	78.04
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	83.41	77.63
TraesCS4A01G324800.1	Wheat	cytosol	82.48	76.88
TraesCS5D01G555600.1	Wheat	cytosol	82.33	76.73
TraesCS5B01G537400.1	Wheat	cytosol	82.17	76.59
Zm00001d034876_P001	Maize	plastid	81.24	75.18
Os03t0852900-01	Rice	plastid	81.4	75.0
KRH26351	Soybean	nucleus	80.0	74.89
EER90498	Sorghum	plastid	80.47	74.68
TraesCS5B01G360900.1	Wheat	cytosol	79.84	74.31
TraesCS5D01G367600.1	Wheat	cytosol	79.84	74.31
AT1G61010.4	Thale cress	cytosol	79.38	73.88
CDY03781	Canola	cytosol	78.6	73.37
Zm00001d012831_P001	Maize	plastid	78.91	73.34
Bra031460.1-P	Field mustard	cytosol	78.91	73.34
CDY68459	Canola	cytosol	78.91	73.34
PGSC0003DMT400001821	Potato	cytosol	78.29	72.66
KRH44086	Soybean	cytosol	77.36	72.53
TraesCS5B01G536400.1	Wheat	cytosol	75.19	71.11
Solyc07g049480.2.1	Tomato	nucleus	77.98	68.81
TraesCS4A01G336600.1	Wheat	cytosol	64.19	68.77
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	74.42	67.99
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	70.23	67.71
CDY50214	Canola	cytosol	20.16	54.62
VIT_12s0035g00160.t01	Wine grape	cytosol	11.78	51.01
GSMUA_Achr3P07540_001	Banana	cytosol	22.33	21.85
GSMUA_Achr1P15280_001	Banana	cytosol	17.36	15.24

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:CPSF73-100_C
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016180	EnsemblPlantsGene:GSMUA_Achr6G00420_001	EnsemblPlants:GSMUA_Achr6P00420_001	EnsemblPlants:GSMUA_Achr6T00420_001
InterPro:IPR036866	UniProt:M0T2Z0	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF10996	PFAM:PF11718
PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SMART:SM01098
SUPFAM:SSF56281	UniParc:UPI000294E5BB	:	:	:	:

Description

Cleavage and polyadenylation specificity factor subunit 3-I [Source:GMGC_GENE;Acc:GSMUA_Achr6G00420_001]

Coordinates

chr6:+:293590..297299

Molecular Weight (calculated)

72236.1 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.169

Length

645 amino acids

Sequence
(BLAST)

001: MTGQTSSLKR RDTTAATAGP REGDQLIVTP LGAGSEVGRS CVYMSYRGKI VLFDCGIHPA YSGMAALPYF DEIDPSTIDV LLVTHFHLDH AASLPYFLEK
101: TTFKGRVFMT HATKAIYKLL LSDYVKVSKV SVEDMLYDEQ DILRTMDKIE VIDFHQTVEV NGIRFWCYTA GHVLGAAMFM VDIAGVRVLY TGDYSREEDR
201: HLRAAEIPQF SPDICIIEST YGVQLHQPRL IREKRFTDVI HSTISQGGRV LIPAFALGRA QELLLILDEY WSNHPEFHNI PIYYASPLAK RCMAVYQTYI
301: NAMNERIRNQ FANSNPFDFK HISPLKSIEN FDDVGPSVVM ASPGSLQSGL SRQLFDKWCS DKKNACVLPG YVVEGTLAKT ILNEPKEMGR LKQKLIGQFA
401: DKNTKIMTPK NCQSVELYFT SEKMAKTIGR LAEKTPEVGE TVSGLLVKKG FTYQIMAPDD LHVFSQLSTA NITQRISIPY SGAFSVIKHR LKQIYESVEA
501: PIEEPDVPTL IVHDRVTIRQ ETEKYVTMQW PSDPISDMVS DSVVAMILNI SREGPKVTAV AEAEKTQEEM EKMAHKVIYS LLVSLFGDVK VGEEGKLIVT
601: VDGDVARLDG KNGEVECDNE GLKERVKTAF RRIQSAVRPI PLSAS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.