Factsheet for Solyc07g049480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 5
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001821	Potato	cytosol	93.02	97.84
VIT_12s0035g00190.t01	Wine grape	cytosol	78.11	82.28
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	77.43	81.67
CDY03781	Canola	cytosol	74.14	78.44
Bra031460.1-P	Field mustard	cytosol	74.42	78.39
CDY68459	Canola	cytosol	74.42	78.39
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	68.81	77.98
KRH26351	Soybean	nucleus	73.32	77.79
AT1G61010.4	Thale cress	cytosol	73.46	77.49
KRH44086	Soybean	cytosol	72.5	77.03
HORVU5Hr1G123370.3	Barley	cytosol	71.0	77.0
TraesCS5D01G555600.1	Wheat	cytosol	71.41	75.43
TraesCS4A01G324800.1	Wheat	cytosol	71.41	75.43
TraesCS5B01G537400.1	Wheat	cytosol	71.27	75.29
Zm00001d034876_P001	Maize	plastid	71.55	75.04
EER90498	Sorghum	plastid	71.14	74.82
Os03t0852900-01	Rice	plastid	71.55	74.71
TraesCS5B01G360900.1	Wheat	cytosol	69.77	73.59
TraesCS5D01G367600.1	Wheat	cytosol	69.77	73.59
Zm00001d012831_P001	Maize	plastid	69.63	73.34
TraesCS5B01G536400.1	Wheat	cytosol	66.07	70.82
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	63.06	68.91
TraesCS4A01G336600.1	Wheat	cytosol	56.22	68.27
CDY50214	Canola	cytosol	22.02	67.65
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	65.25	67.56
Solyc04g008030.1.1	Tomato	cytosol	25.17	28.35
Solyc03g025540.2.1	Tomato	nucleus	17.92	17.73

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:CPSF73-100_C
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016180	InterPro:IPR036866	UniProt:K4CF51	InterPro:Metallo-B-lactamas
PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11
InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281
EnsemblPlantsGene:Solyc07g049480.2	EnsemblPlants:Solyc07g049480.2.1	UniParc:UPI000276B24F	:	:	:

Description

Cleavage and polyadenylation specificity factor subunit 3-I [Source:Projected from Arabidopsis thaliana (AT1G61010) UniProtKB/Swiss-Prot;Acc:Q9C952]

Coordinates

chr7:+:59754478..59763143

Molecular Weight (calculated)

81894.8 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.103

Length

731 amino acids

Sequence
(BLAST)

001: MILVNFFRYY PQSTKSPNFF LFFPPILHLR CSSAISMAST GQPQSSLKRP SPGVNRDGDK LVITPLGAGN EVGRSCVFMT FKGKTIMFDC GIHPGYSGMS
101: ALPYFDEIDP SSIDVLLVTH FHLDHAASLP YFLEKTTFKG RVFMTHATKA IYKLLLSDYV KVSKVSVEDM LFDEHDILHS MEKIEVIDFH QTMEVNGIRF
201: WCYTAGHVLG AAMFMVDIAG VRVLYTGDYS REEDRHLRAA EIPQFSPDVC IIESTYGVQL HMPRQIREKL FTDVIHSTLM QGGRVLIPAY ALGRAQELLL
301: ILEEYWSNHP ELANFPIYYA SPLARRCMAV YQTYINAMNE RIRNQFISAN PFNFKHISSL NSIEDFIDNK PCVVMASPGS LQSGLSRQLF DKWCSDKKNA
401: CVIPGYVVEG TLAKTIINEP KEVTLTNGLS APLNMQVHYI SFSAHADYAQ TSSFLKELMP PNIILVHGAS NEMDRLKQKL TSLFADGNTK IITPKNCQSV
501: EMHFNSDKMA KTIGKLAEKT PEVGEIVSGL LVKKGFTYQI MAPDDLHVFS QLSTANVTQR ITIPYSGAFA VIQHRLKQIY ESVESSTDEE SGVPTLRVHE
601: RVMVKQESEN HLSVHWTADP ICDMVSDSVV ALVLNASREM PKVSIDSETP LNEEEDAKKT EKIVHALLVS MFGNVKVGDG GKLVINFDGI LAHLDKQTGD
701: VECENEALKE RVKTAYWRIR SAVKPIPLST S

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.