Factsheet for VIT_12s0035g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00190.t01	Wine grape	cytosol	97.69	97.55
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	77.63	83.41
VIT_12s0035g00160.t01	Wine grape	cytosol	17.89	83.22
VIT_12s0035g00170.t01	Wine grape	plastid	21.93	82.61
PGSC0003DMT400001821	Potato	cytosol	82.11	81.87
HORVU5Hr1G123370.3	Barley	cytosol	79.08	81.31
TraesCS5D01G555600.1	Wheat	cytosol	80.38	80.49
TraesCS4A01G324800.1	Wheat	cytosol	80.09	80.2
TraesCS5B01G537400.1	Wheat	cytosol	79.94	80.06
Os03t0852900-01	Rice	plastid	80.38	79.57
EER90498	Sorghum	plastid	79.51	79.28
Zm00001d034876_P001	Maize	plastid	79.65	79.2
TraesCS5D01G367600.1	Wheat	cytosol	78.21	78.21
Zm00001d012831_P001	Maize	plastid	78.21	78.1
TraesCS5B01G360900.1	Wheat	cytosol	77.92	77.92
Solyc07g049480.2.1	Tomato	nucleus	81.67	77.43
TraesCS5B01G536400.1	Wheat	cytosol	73.74	74.93
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	70.27	72.8
TraesCS4A01G336600.1	Wheat	cytosol	63.2	72.76
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	72.87	71.53
VIT_01s0011g05780.t01	Wine grape	cytosol	5.48	40.43
VIT_16s0050g00590.t01	Wine grape	cytosol	18.61	17.43

Protein Annotations

EntrezGene:100261042	wikigene:100261042	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10
InterPro:Beta_Casp	ProteinID:CCB55094	ProteinID:CCB55094.1	InterPro:CPSF73-100_C	UniProt:F6HK91	EMBL:FN595990
InterPro:IPR036866	EntrezGene:LOC100261042	wikigene:LOC100261042	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521
PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	TIGR:TC66354	UniParc:UPI00021090E4
ArrayExpress:VIT_12s0035g00030	EnsemblPlantsGene:VIT_12s0035g00030	EnsemblPlants:VIT_12s0035g00030.t01	unigene:Vvi.8042	RefSeq:XP_002271646	RefSeq:XP_002271646.2
RefSeq:XP_010658084.1	RefSeq:XP_010658085.1	RefSeq:XP_019079085.1	:	:	:

Description

No Description!

Coordinates

chr12:-:19171584..19177518

Molecular Weight (calculated)

77484.3 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.133

Length

693 amino acids

Sequence
(BLAST)

001: MASTGPSQSL KRPDSSLTRG DQLIITPLGA GNEVGRSCVY MSYKGKTILF DCGIHPAYSG MAALPYFDEI DPSTIDVLLV THFHLDHAAS LPYFLEKTTF
101: KGRVFMTHAT KAIYKLLLSD YVKVSKVSVE DMLYDEQDIL RSMDKIEVID FHQTLEVNGI RFWCYTAGHV LGAAMFMVDI AGVRVLYTGD YSREEDRHLR
201: AAEIPQFCPD ICIIESTYGV QLHQPRHVRE KRFTDVIHST ISQGGRVLIP AYALGRAQEL LLILDEYWSN HPELHNVPIY YASPLAKRCM AVYQTYINSM
301: NERIRNQFAN SNPFDFKHIS PLKSIENFND VGPSVVMASP GGLQSGLSRQ LFDMWCSDKK NACVIPGYVV GGTLAKTIIN EPKEVTLMNG LTAPLNMQVH
401: YISFSAHADF AQTSTFLKEL MPPNIILVHG EANEMGRLKQ KLITQFADCN TKIISPKNCQ SVEMYFNSEK MAKTIGRLAE KTPEVGETVS GLLVKKGFTY
501: QIMAPDDLHV FWQLSTANVT QRITIPYTGA FGVIKHRLKQ IYESVESLPD EESEVPAFRV HERVTVKHDS EKHISLHWTS DPISDMVSDS IVALVLNISL
601: EIPKVIVESE AIKTEEENGK KAEKVIHALL VSLFGDVKLE GNGNLVISVD GNVVHLDKQS GNVESENEGL KERVRVAFQR IQNAVKPIPP SVS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.