Factsheet for VIT_16s0050g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05780.t01
VIT_02s0025g02960.t01
VIT_02s0025g02970.t01
VIT_08s0105g00330.t01
VIT_10s0003g04600.t01
VIT_16s0022g01860.t01
VIT_16s0050g00590.t01
VIT_17s0000g05080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	VIT_10s0003g04600.t01	AT1G30460.1	16897494
AT5G23880.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT5G23880.1	VIT_01s0011g05780.t01	AT2G01730.1	16897494
AT5G23880.1	VIT_01s0011g05780.t01	AT2G01730.1	18479511
AT5G23880.1	VIT_02s0025g02960.t01	AT4G10500.1	21798944
AT5G23880.1	VIT_02s0025g02970.t01	AT4G10500.1	21798944
AT5G23880.1	VIT_08s0105g00330.t01	AT5G01400.1	17008405
AT5G23880.1	VIT_16s0050g00590.t01	AT5G23880.1	16897494
AT5G23880.1	VIT_16s0022g01860.t01	AT5G51660.1	16897494
AT5G23880.1	VIT_16s0022g01860.t01	AT5G51660.1	17008405
AT5G23880.1	VIT_16s0022g01860.t01	AT5G51660.1	18479511
AT5G23880.1	VIT_17s0000g05080.t01	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38460	Soybean	cytosol	83.92	84.03
KRH08941	Soybean	cytosol, nucleus	83.38	83.6
Solyc03g025540.2.1	Tomato	nucleus	81.08	81.19
KRH30256	Soybean	cytosol	73.65	80.62
GSMUA_Achr1P15280_001	Banana	cytosol	79.05	79.59
AT5G23880.1	Thale cress	cytosol	77.16	77.27
Bra009712.1-P	Field mustard	cytosol	76.62	76.73
CDX80392	Canola	cytosol	76.62	76.73
CDX88053	Canola	cytosol	76.62	76.73
Os09t0569400-01	Rice	cytosol	75.27	75.47
EER93127	Sorghum	cytosol	73.78	73.98
TraesCS5B01G462500.2	Wheat	cytosol	73.78	73.88
TraesCS5D01G464200.1	Wheat	cytosol	73.65	73.85
TraesCS5A01G453700.5	Wheat	cytosol	73.38	73.48
KRH30262	Soybean	cytosol	53.92	71.63
Zm00001d044552_P006	Maize	cytosol, plasma membrane	72.97	70.5
HORVU5Hr1G109220.1	Barley	plastid	74.19	69.67
VIT_12s0035g00160.t01	Wine grape	cytosol	4.59	22.82
VIT_01s0011g05780.t01	Wine grape	cytosol	2.84	22.34
VIT_12s0035g00170.t01	Wine grape	plastid	5.0	20.11
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	17.43	18.61
VIT_12s0035g00190.t01	Wine grape	cytosol	17.43	18.59

Protein Annotations

EntrezGene:100267865	wikigene:100267865	MapMan:16.2.1.2.2	Gene3D:3.60.15.10	InterPro:Beta_Casp	ProteinID:CBI22708
ProteinID:CBI22708.3	InterPro:CPSF2	InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	UniProt:E0CV08
EMBL:FN595243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005847
GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009987	GO:GO:0035194	GO:GO:0040029	InterPro:IPR036866	EntrezGene:LOC100267865
wikigene:LOC100267865	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996	PFAM:PF13299	PFAM:PF16661
PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM01027	SUPFAM:SSF56281
TIGR:TC70099	UniParc:UPI00015CBBEC	ArrayExpress:VIT_16s0050g00590	EnsemblPlantsGene:VIT_16s0050g00590	EnsemblPlants:VIT_16s0050g00590.t01	unigene:Vvi.17537
RefSeq:XP_002268591	RefSeq:XP_002268591.1	SEG:seg	:	:	:

Description

Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/TrEMBL;Acc:E0CV08]

Coordinates

chr16:+:17546592..17566146

Molecular Weight (calculated)

82245.3 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.111

Length

740 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LVDCGWNDHF DPSFLQPLAR VASTIDAVLL AHPDTLHLGA LPYAMKQLGL SAPVYSTEPV YRLGLLTMYD
101: QYLSRKQVSD FDLFTLDDID SAFQNVTRLT YSQNYHLFGK GEGIVIAPHV AGHLLGGTVW KITKDGEDVI YAVDFNHRKE RLLNGTVLES FVRPAVLITD
201: AYNALNNQPS RRQRDQEFLD VILKTLRGDG NVLLPVDTAG RVLELMLILE QYWTQHHLNY PIFFLTYVAS STIDYVKSFL EWMSDSIAKS FEHTRDNAFL
301: LKHVTLLISK SELEKVPDGP KIVLASMASL EAGFSHDIFV EWATDAKNLV LFSERGQFAT LARMLQADPP PKAVKVTMSK RVPLVGEELA AYEEEQERIK
401: KEEALKASLS KEDEMKASRG SDNKLGDPMV IDTTTPPASS DVAVPHVGGH RDILIDGFVP PSTSVAPMFP FYENSSEWDD FGEVINPEDY VIKDEDMDQA
501: TMQVGDDLNG KLDEGAASLI FDTTPSKVIS NELTVQVKCM LVYMDFEGRS DGRSIKSILS HVAPLKLVLV HGSAEATEHL KQHCLKHVCP HVYAPQIGET
601: IDVTSDLCAY KVQLSEKLMS NVLFKKLGDY EVAWVDAEVG KTESGSLSLL PLSTPPPSHD TVFVGDIKMA DFKQFLASKG IQVEFSGGAL RCGEYVTLRK
701: VGDASQKGGG AIIQQIVMEG PLCDEYYKIR EYLYSQYYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.