CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88461
KRH08941
KRH09220
KRH11760
KRH30256
KRH30262
KRH36762
KRH38460
KRH38714
KRH54731
KRH63183
KRH65727
KRH70353
KRH75969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	KRH11760	AT1G30460.1	16897494
AT5G23880.1	KRH36762	AT1G30460.1	16897494
AT5G23880.1	KRH11760	AT1G30460.1	18479511
AT5G23880.1	KRH36762	AT1G30460.1	18479511
AT5G23880.1	KRH70353	AT2G01730.1	16897494
AT5G23880.1	KRH70353	AT2G01730.1	18479511
AT5G23880.1	KRG88461	AT5G01400.1	17008405
AT5G23880.1	KRH65727	AT5G01400.1	17008405
AT5G23880.1	KRH75969	AT5G01400.1	17008405
AT5G23880.1	KRH08941	AT5G23880.1	16897494
AT5G23880.1	KRH30256	AT5G23880.1	16897494
AT5G23880.1	KRH30262	AT5G23880.1	16897494
AT5G23880.1	KRH38460	AT5G23880.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	16897494
AT5G23880.1	KRH38714	AT5G51660.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	17008405
AT5G23880.1	KRH38714	AT5G51660.1	17008405
AT5G23880.1	KRH09220	AT5G51660.1	18479511
AT5G23880.1	KRH38714	AT5G51660.1	18479511
AT5G23880.1	KRH54731	AT5G60940.1	18479511
AT5G23880.1	KRH63183	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38460	Soybean	cytosol	80.97	61.03
KRH08941	Soybean	cytosol, nucleus	78.82	59.49
KRH30256	Soybean	cytosol	71.81	59.17
VIT_16s0050g00590.t01	Wine grape	cytosol	71.63	53.92
AT5G23880.1	Thale cress	cytosol	66.97	50.47
Bra009712.1-P	Field mustard	cytosol	66.79	50.34
CDX80392	Canola	cytosol	66.79	50.34
CDX88053	Canola	cytosol	66.43	50.07
Solyc03g025540.2.1	Tomato	nucleus	66.43	50.07
GSMUA_Achr1P15280_001	Banana	cytosol	64.81	49.12
EER93127	Sorghum	cytosol	63.38	47.83
Os09t0569400-01	Rice	cytosol	63.38	47.83
TraesCS5B01G462500.2	Wheat	cytosol	61.58	46.41
TraesCS5D01G464200.1	Wheat	cytosol	61.4	46.34
TraesCS5A01G453700.5	Wheat	cytosol	61.4	46.28
Zm00001d044552_P006	Maize	cytosol, plasma membrane	62.84	45.69
HORVU5Hr1G109220.1	Barley	plastid	61.94	43.78
KRH70353	Soybean	cytosol	18.49	19.36
KRH44086	Soybean	cytosol	19.93	16.13
KRH26351	Soybean	nucleus	19.93	16.11

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	UniProt:A0A0R0HIA6	EMBL:ACUP02006943	InterPro:Beta_Casp	InterPro:CPSF2
InterPro:CPSF2_MBL	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G171100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR036866	EnsemblPlants:KRH30262	ProteinID:KRH30262	ProteinID:KRH30262.1
InterPro:Metallo-B-lactamas	PFAM:PF10996	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI0006ED8D2F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:18435548..18442416

Molecular Weight (calculated)

62164.4 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.077

Length

557 amino acids

Sequence
(BLAST)

001: MGTSVRVTPL CGVYNENPLS YLVSIDGFNF LVDCDWNDHF DPSHLQPLAR VASTIDAVLL SHADTLHLGA LPYAMKRLGL SAPVYSTEPI YRLGLLTMYD
101: QMLNISSSSV CQVSGFDLFT LDDIDSAFQS VTRITYSQNH HFSGKGEGIV IAPHVAGHLL GGTIWKITKD GEDVIYAVDF NHRKERHLNG TVLGSFVRPA
201: VLITDAYNAL NNQPYRHILK KTLRAGGNVL LPVDTVGRLL ELILMLELYW ADENLNYPIY FLTYVASSTI DYVKSFLEWM SDTIAKSFEK THCYACTCWY
301: VTLLINKTEL DNAPDGPKVV LASMASLEAG FSHDIFVEWA NDVKNLVLFT ERGQFATLAR MLQADPPPKA VKVIVSKCVP LVGEELISYE EEQNRIKKEA
401: LKASLVKEEE LKTSHGADND TSDPMVIDSG NNHVPPEVTG PRGGGYRDIF IDGFVPPSTS VAPIFPCYEN TSEWDDFGEV INPDDYVIRD EDMDQTAKHT
501: CFRQCCFRCS VASADPCTKT FRKIIMYSSS CMIQKQKGKL KIKSLVKVLL CSRYHGI

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.