Factsheet for Zm00001d044552_P006

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002564_P001
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d022586_P001
Zm00001d034054_P002
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d044213_P001
Zm00001d044552_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	Zm00001d014378_P001	AT1G30460.1	16897494
AT5G23880.1	Zm00001d014379_P001	AT1G30460.1	16897494
AT5G23880.1	Zm00001d036594_P001	AT1G30460.1	16897494
AT5G23880.1	Zm00001d036595_P001	AT1G30460.1	16897494
AT5G23880.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT5G23880.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT5G23880.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT5G23880.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT5G23880.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT5G23880.1	Zm00001d044213_P001	AT2G01730.1	18479511
AT5G23880.1	Zm00001d002564_P001	AT4G10500.1	21798944
AT5G23880.1	Zm00001d022586_P001	AT5G01400.1	17008405
AT5G23880.1	Zm00001d044552_P006	AT5G23880.1	16897494
AT5G23880.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT5G23880.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT5G23880.1	Zm00001d004153_P002	AT5G51660.1	17008405
AT5G23880.1	Zm00001d004154_P002	AT5G51660.1	17008405
AT5G23880.1	Zm00001d004153_P002	AT5G51660.1	18479511
AT5G23880.1	Zm00001d004154_P002	AT5G51660.1	18479511
AT5G23880.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93127	Sorghum	cytosol	93.21	96.75
Os09t0569400-01	Rice	cytosol	84.2	87.4
TraesCS5D01G464200.1	Wheat	cytosol	83.68	86.86
TraesCS5B01G462500.2	Wheat	cytosol	83.68	86.74
TraesCS5A01G453700.5	Wheat	cytosol	83.68	86.74
HORVU5Hr1G109220.1	Barley	plastid	83.29	80.96
GSMUA_Achr1P15280_001	Banana	cytosol	71.8	74.83
VIT_16s0050g00590.t01	Wine grape	cytosol	70.5	72.97
KRH38460	Soybean	cytosol	70.23	72.8
KRH08941	Soybean	cytosol, nucleus	69.45	72.09
CDX80392	Canola	cytosol	68.67	71.18
Bra009712.1-P	Field mustard	cytosol	68.28	70.77
AT5G23880.1	Thale cress	cytosol	68.15	70.64
CDX88053	Canola	cytosol	68.02	70.5
KRH30256	Soybean	cytosol	62.01	70.27
Solyc03g025540.2.1	Tomato	nucleus	67.1	69.55
KRH30262	Soybean	cytosol	45.69	62.84
Zm00001d044213_P001	Maize	cytosol	14.36	19.71
Zm00001d012831_P001	Maize	plastid	16.45	18.16
Zm00001d034876_P001	Maize	plastid	16.06	17.65

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	UniProt:A0A1D6NN32	InterPro:Beta_Casp	InterPro:CPSF2	InterPro:CPSF2_MBL
ncoils:Coil	InterPro:Cpsf2_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0035194	GO:GO:0040029	InterPro:IPR036866
InterPro:Metallo-B-lactamas	ProteinID:ONM41568.1	ProteinID:ONM41571.1	ProteinID:ONM41577.1	PFAM:PF07521	PFAM:PF10996
PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI0002211F8E	EnsemblPlantsGene:Zm00001d044552	EnsemblPlants:Zm00001d044552_P006
EnsemblPlants:Zm00001d044552_T006	SEG:seg	:	:	:	:

Description

Cleavage and polyadenylation specificity factor subunit 2

Coordinates

chr3:-:231536754..231545930

Molecular Weight (calculated)

85470.1 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.107

Length

766 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL SGAYGEGPLC YLLAVDGFRF LLDCGWTDLC DTSQLQPLAK VAPTVDAVLL SHPDMMHLGA LPYAMKHLGL SAPVYATEPV FRLGLLTMYD
101: HFLSRWQVSD FDLFTLDDVD AAFQNVVRLK YSQNYLLNDK GEGVVIAPHV AGHLLGGTVW KITKDGEDVV YAVDFNHRKE RHLNGTVLGS FVRPAVLITD
201: AYNALNNQGY RKKQDQDFIE SLIKVLATGG SVLLPVDTAG RVLELLLLLD MYWDERRLQY PIYFLTNVST STVDYVKSFL EWMGDQIAKS FESSRANAFL
301: LKKVTLIINK EELEKLGDAP KVVLASMASL EVGFSHDIFV EMANEARNLV LFTEKGQKIF ALQFGTLARM LQVDPPPKAL KVTMSKRIPL VGNELKAYEE
401: EQERIKKEKS LKASLVKEEE LKASHGSNTK ASEPMVIDAS SSRKSVNASH FGGNNDILID GFVPPLTSVA PMFPFFENTA EWDDFGEVIN PDDYMMKQEE
501: MDNTLMLGPG DGLDGRIDDG SARLLLDSTP SKVISNEMTV QVKCSLVYMD FEGRSDGRSV KSIIAHVAPL KLILVHGSAE ATEHLKMHCA KNLDLHVYAP
601: QIEETIDVTS DLCAYKVQLS EKLMSNIISK KLGEHEIAWV DAEVGKEDEK LILLPPSSTP PPHKPVLVGD LKLSDFKQFL ENKGWQDFSV ERERIKYVEI
701: QSLRKELLQV EFAGGALRCG EYIMVRKVGD SILKGSTGSQ QIVIEGPLCE DYYKIRELLY SQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.