CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX80392
CDX88053
CDX90761
CDX91600
CDX98205
CDY02182
CDY04840
CDY09421
CDY12057
CDY46934
CDY58694
CDY66642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	CDX77591	AT1G30460.1	16897494
AT5G23880.1	CDX98205	AT1G30460.1	16897494
AT5G23880.1	CDY12057	AT1G30460.1	16897494
AT5G23880.1	CDX77591	AT1G30460.1	18479511
AT5G23880.1	CDX98205	AT1G30460.1	18479511
AT5G23880.1	CDY12057	AT1G30460.1	18479511
AT5G23880.1	CDY09421	AT2G01730.1	16897494
AT5G23880.1	CDY66642	AT2G01730.1	16897494
AT5G23880.1	CDY09421	AT2G01730.1	18479511
AT5G23880.1	CDY66642	AT2G01730.1	18479511
AT5G23880.1	CDX90761	AT4G10500.1	21798944
AT5G23880.1	CDY04840	AT5G01400.1	17008405
AT5G23880.1	CDX80392	AT5G23880.1	16897494
AT5G23880.1	CDX88053	AT5G23880.1	16897494
AT5G23880.1	CDX91600	AT5G51660.1	16897494
AT5G23880.1	CDY46934	AT5G51660.1	16897494
AT5G23880.1	CDX91600	AT5G51660.1	17008405
AT5G23880.1	CDY46934	AT5G51660.1	17008405
AT5G23880.1	CDX91600	AT5G51660.1	18479511
AT5G23880.1	CDY46934	AT5G51660.1	18479511
AT5G23880.1	CDY02182	AT5G60940.1	18479511
AT5G23880.1	CDY58694	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009712.1-P	Field mustard	cytosol	99.73	99.73
CDX80392	Canola	cytosol	98.92	98.92
AT5G23880.1	Thale cress	cytosol	93.1	93.1
KRH38460	Soybean	cytosol	77.54	77.54
KRH08941	Soybean	cytosol, nucleus	77.13	77.24
VIT_16s0050g00590.t01	Wine grape	cytosol	76.73	76.62
Solyc03g025540.2.1	Tomato	nucleus	75.51	75.51
KRH30256	Soybean	cytosol	67.93	74.26
GSMUA_Achr1P15280_001	Banana	cytosol	71.99	72.38
Os09t0569400-01	Rice	cytosol	71.18	71.27
TraesCS5B01G462500.2	Wheat	cytosol	70.77	70.77
EER93127	Sorghum	cytosol	70.64	70.73
TraesCS5D01G464200.1	Wheat	cytosol	70.5	70.6
TraesCS5A01G453700.5	Wheat	cytosol	70.5	70.5
Zm00001d044552_P006	Maize	cytosol, plasma membrane	70.5	68.02
KRH30262	Soybean	cytosol	50.07	66.43
HORVU5Hr1G109220.1	Barley	plastid	70.5	66.12
CDY66642	Canola	cytosol	17.19	20.65
CDY09421	Canola	cytosol	16.91	20.33
CDY03781	Canola	cytosol	18.0	19.25
CDY68459	Canola	cytosol	18.0	19.16
CDY50214	Canola	cytosol	2.98	9.24

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	GO:A0A078DLF9	InterPro:Beta_Casp	EnsemblPlants:CDX88053	ProteinID:CDX88053
ProteinID:CDX88053.1	InterPro:CPSF2	InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005847	GO:GO:0006139
GO:GO:0006378	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147467001
InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996	PFAM:PF13299	PFAM:PF16661
PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027
SUPFAM:SSF56281	UniParc:UPI0004EE924C	:	:	:	:

Description

BnaA06g26440D

Coordinates

chrLK031854:+:320710..325809

Molecular Weight (calculated)

81875.5 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.154

Length

739 amino acids

Sequence
(BLAST)

001: MGTSVQVSPL CGVYNENPLA YLVSIDGFNF LLDCGWNDLF DPSLLEPLSR VASTVDAVLL SHPDTLHLGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QYLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNFHLSGK GEGIVIAPHV AGHMLGGSIW KITKDGEEVV YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYNALYTNQT QSHHRDTEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRAFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFARDIF VEWANDPRNL VLFTETSQFG TLARMLQAAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEDETKASH GPDDNSSEPM VIDTKTTHDV VGSHGPAYKD ILIDGFVPPS SSIAPMFPFY DNTADWDEYG EVINPDDYVI KDEDMDRGAM
501: HAGGDVDGRL DEATASLMLD TRPSKVISNE LIVTVSCSLV KIDYEGRSDG RSIKSTIAHV SPLKLVLVHA TAEATEHLKQ HCLNSICPHV YAPKIEETID
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ESEKRCLQPM ASAAAPHKPV LVGDLKMQDF KQFLASKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.