Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014881.1-P | Field mustard | nucleus | 81.18 | 83.28 |
| CDX98205 | Canola | nucleus | 75.8 | 82.9 |
| CDY52193 | Canola | nucleus | 23.7 | 78.33 |
| AT1G30460.1 | Thale cress | nucleus | 76.97 | 72.58 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 76.3 | 69.21 |
| CDX90251 | Canola | nucleus | 24.54 | 64.6 |
| KRH36762 | Soybean | nucleus | 59.5 | 51.98 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 58.66 | 51.86 |
| KRH11760 | Soybean | nucleus | 59.83 | 51.52 |
| Solyc02g070240.2.1 | Tomato | nucleus | 57.98 | 51.42 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 55.97 | 50.68 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 54.29 | 50.47 |
| Solyc02g021760.2.1 | Tomato | nucleus | 57.98 | 50.07 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 53.61 | 49.46 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 52.77 | 48.53 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 56.13 | 48.27 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 52.44 | 48.07 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 52.44 | 48.0 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 52.6 | 47.93 |
| TraesCS7D01G450100.1 | Wheat | nucleus | 52.27 | 47.85 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 53.78 | 46.65 |
| Zm00001d014379_P001 | Maize | nucleus | 16.47 | 39.84 |
| Zm00001d036595_P001 | Maize | nucleus | 16.3 | 38.65 |
| CDY47426 | Canola | nucleus | 16.81 | 28.41 |
| CDY04384 | Canola | nucleus | 16.47 | 28.32 |
Protein Annotations
| MapMan:16.2.1.2.5 | Gene3D:3.10.590.10 | Gene3D:4.10.1000.10 | GO:A0A078CK96 | EnsemblPlants:CDX77591 | ProteinID:CDX77591 |
| ProteinID:CDX77591.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00128512001 | InterPro:IPR000571 | InterPro:IPR007275 | PFAM:PF04146 | PFscan:PS50103 | PFscan:PS50882 |
| PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | SMART:SM00356 | SUPFAM:SSF90229 | UniParc:UPI0004EE51CE | InterPro:YTH_domain |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
BnaA07g07290D
Coordinates
chrLK031811:+:2137668..2142072
Molecular Weight (calculated)
65971.9 Da
IEP (calculated)
7.387
GRAVY (calculated)
-0.771
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDADGLSFD FEGGLDSAPT QPTASVPVPP PENSSSAAVN LTPNYDHSSA TVPGAGRGRS FRQTVCRHWL RGLCMKAEAC GFLHQYDKAR MPICRFFRLH
101: GECREHDCVY KHTNEDIKEC NMYKLGFCPN GSECRYRHAK VPGPPPPVEE MQGQLQESGN LQQQQPQQTQ HQVSQTQTPN PAEQTSHAHP LPRGVNRCVQ
201: SPTVFNWLVN PATVRVMLCL KTWVFRYFVV KSYNLENFEL SVQRGVWATQ RSNEAKLNEA FDSVANVILI FSVNRTRHFQ GCAKMTSRIG GYIGGENWKH
301: EHGTAQFGRN FSVKWLKLCE LSFHKTRNLR NPYNENLPVK ISRDCQELEP SVGEELASLL YLEPDSELMA ISIAAEAKRE EEKAKGVNPE SRAENPDIVP
401: FEDNEEEEDE SEEEEDGMAN GPQGRGRGRG MMWPPQMPLG RGIRPMPGMG GFPLGVMAPA EAFPYGPGGY NGMPDPFGMG GPRPFGQHGP RFGGDFRGPV
501: PGMMFPGRPP QQFPRKGYGM MGRGPVMGGM GNAAPRGGGG RPMYHPPATT TTSVRPASSN RRTPERSDDR GVAVDEHTSH EMEQSEGGNK GKKRR
101: GECREHDCVY KHTNEDIKEC NMYKLGFCPN GSECRYRHAK VPGPPPPVEE MQGQLQESGN LQQQQPQQTQ HQVSQTQTPN PAEQTSHAHP LPRGVNRCVQ
201: SPTVFNWLVN PATVRVMLCL KTWVFRYFVV KSYNLENFEL SVQRGVWATQ RSNEAKLNEA FDSVANVILI FSVNRTRHFQ GCAKMTSRIG GYIGGENWKH
301: EHGTAQFGRN FSVKWLKLCE LSFHKTRNLR NPYNENLPVK ISRDCQELEP SVGEELASLL YLEPDSELMA ISIAAEAKRE EEKAKGVNPE SRAENPDIVP
401: FEDNEEEEDE SEEEEDGMAN GPQGRGRGRG MMWPPQMPLG RGIRPMPGMG GFPLGVMAPA EAFPYGPGGY NGMPDPFGMG GPRPFGQHGP RFGGDFRGPV
501: PGMMFPGRPP QQFPRKGYGM MGRGPVMGGM GNAAPRGGGG RPMYHPPATT TTSVRPASSN RRTPERSDDR GVAVDEHTSH EMEQSEGGNK GKKRR
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.