Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47426 | Canola | nucleus | 94.8 | 93.18 |
| Bra033125.1-P | Field mustard | nucleus | 91.62 | 91.35 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 68.5 | 53.38 |
| KRH27989 | Soybean | cytosol | 41.04 | 52.99 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 50.58 | 47.3 |
| KRH77450 | Soybean | nucleus | 51.45 | 44.95 |
| Solyc08g007760.2.1 | Tomato | nucleus | 38.44 | 44.48 |
| Solyc08g007750.2.1 | Tomato | nucleus | 42.49 | 39.84 |
| Solyc08g007730.2.1 | Tomato | cytosol | 39.6 | 34.68 |
| PGSC0003DMT400032616 | Potato | cytosol | 20.81 | 31.03 |
| CDX98205 | Canola | nucleus | 26.3 | 16.73 |
| CDX77591 | Canola | nucleus | 28.32 | 16.47 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 28.03 | 14.79 |
| CDX90251 | Canola | nucleus | 4.34 | 6.64 |
| CDY52193 | Canola | nucleus | 3.18 | 6.11 |
Protein Annotations
| EnsemblPlants:CDY04384 | EnsemblPlantsGene:GSBRNA2T00118359001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY04384 | ProteinID:CDY04384.1 | SEG:seg | UniParc:UPI0004EE3229 | MapMan:35.1 |
Description
BnaC02g28640D
Coordinates
chrLK031953:+:45196..47852
Molecular Weight (calculated)
39015.2 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.835
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTAKENV SVVDSSLTDW KQDIANSDDP ESSGDRKPSN AVRGHFLGSK NKSKPGYQTR YFIIKSLNYD NIQLSVERGI WATQVMNEPI LEGAFHNSGR
101: VVLIFSVNMS GFFQGYAEML SPVGWRRDHI WSQGGGKNNP WGRSFKVKWL RLTELPFQKT LHLKNPLNDY KPVKISRDCQ ELPGDIGEAL CELLDAHSCD
201: DGLLNRDDYS TKRSRVEPPS SSGDEEYNNN MWGHYPPAVY SNQDGLSRFH LAQQGGYGVE QEKYLRFNSW GLPLESPQAN TLTDDDFLNM SYEEYVEIHS
301: RCMRQLGLPV IPQSHATQEP SSKTDDGSNG SSKDRSSSRK RGRDSS
101: VVLIFSVNMS GFFQGYAEML SPVGWRRDHI WSQGGGKNNP WGRSFKVKWL RLTELPFQKT LHLKNPLNDY KPVKISRDCQ ELPGDIGEAL CELLDAHSCD
201: DGLLNRDDYS TKRSRVEPPS SSGDEEYNNN MWGHYPPAVY SNQDGLSRFH LAQQGGYGVE QEKYLRFNSW GLPLESPQAN TLTDDDFLNM SYEEYVEIHS
301: RCMRQLGLPV IPQSHATQEP SSKTDDGSNG SSKDRSSSRK RGRDSS
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.