Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007750.2.1 | Tomato | nucleus | 53.88 | 33.88 |
| Solyc08g007760.2.1 | Tomato | nucleus | 37.5 | 29.1 |
| KRH27989 | Soybean | cytosol | 25.43 | 22.01 |
| CDY04384 | Canola | nucleus | 31.03 | 20.81 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 32.76 | 20.54 |
| CDY47426 | Canola | nucleus | 29.74 | 19.6 |
| Bra033125.1-P | Field mustard | nucleus | 28.88 | 19.31 |
| KRH77450 | Soybean | nucleus | 28.02 | 16.41 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 30.6 | 15.99 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 6.47 | 5.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032616 | EnsemblPlantsGene:PGSC0003DMG400012521 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 | PFAM:PF04146 |
| PFscan:PS50882 | PGSC:PGSC0003DMG400012521 | SEG:seg | UniParc:UPI000294A6F3 | UniProt:M1AXP6 | MapMan:35.2 |
Description
Splicing factor yt521-B [Source:PGSC_GENE;Acc:PGSC0003DMG400012521]
Coordinates
chr8:+:205195..210428
Molecular Weight (calculated)
25690.1 Da
IEP (calculated)
4.391
GRAVY (calculated)
-0.288
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDTARENA SIANSIVTDC KNERRNFDGP DSSRLGVNED TNRSIAEELT VSSPPFGISS AIENDSSCLG VNEDTNRSIA EELTVSSPPI GISSVIEKGK
101: LYSIRYFVIK SLNHENIQLS VSRGIWATQA MNEAILDEAF HELPPDIGEA LCELLDGQDA LDVDLKMDIF ARNNLSFKRP YVEPSLHLGD QDCNASLIPN
201: GTMFYPSLLY QHQIDASRLH VAPQRIKWCI FC
101: LYSIRYFVIK SLNHENIQLS VSRGIWATQA MNEAILDEAF HELPPDIGEA LCELLDGQDA LDVDLKMDIF ARNNLSFKRP YVEPSLHLGD QDCNASLIPN
201: GTMFYPSLLY QHQIDASRLH VAPQRIKWCI FC
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVSDST ITINTRAIK
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVSDST ITINTRAIK
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.