Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27989 | Soybean | cytosol | 42.16 | 58.21 |
| CDY04384 | Canola | nucleus | 47.3 | 50.58 |
| CDY47426 | Canola | nucleus | 47.57 | 50.0 |
| Bra033125.1-P | Field mustard | nucleus | 45.95 | 48.99 |
| Solyc08g007760.2.1 | Tomato | nucleus | 35.95 | 44.48 |
| KRH77450 | Soybean | nucleus | 46.49 | 43.43 |
| Solyc08g007750.2.1 | Tomato | nucleus | 40.81 | 40.92 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 48.65 | 40.54 |
| Solyc08g007730.2.1 | Tomato | cytosol | 42.97 | 40.25 |
| PGSC0003DMT400032616 | Potato | cytosol | 20.54 | 32.76 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 25.14 | 13.82 |
Protein Annotations
| EntrezGene:100254803 | wikigene:100254803 | Gene3D:3.10.590.10 | MapMan:35.1 | ProteinID:CCB58420 | ProteinID:CCB58420.1 |
| UniProt:F6HUJ7 | EMBL:FN596251 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR007275 | EntrezGene:LOC100254803 | wikigene:LOC100254803 | PFAM:PF04146 | PFscan:PS50882 | PANTHER:PTHR12357 |
| PANTHER:PTHR12357:SF3 | UniParc:UPI00021088BF | ArrayExpress:VIT_02s0025g04760 | EnsemblPlantsGene:VIT_02s0025g04760 | EnsemblPlants:VIT_02s0025g04760.t01 | RefSeq:XP_002275532 |
| RefSeq:XP_002275532.2 | InterPro:YTH_domain | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:4309284..4311950
Molecular Weight (calculated)
41874.3 Da
IEP (calculated)
6.563
GRAVY (calculated)
-0.633
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDTAKENA SVVDSSVTDW KHDMGNFDDP ESSSYKANED GYPSGPEEQR HSHTGMLNSS ANKKGKLYST RYFIIKSLNH HNIQLSMEKG IWATQVMNEP
101: ILEEAFHNSG KVILIFSVNM SGFFQGYAQM MSSVGWRRDN VWSQGSGGNN PWGRSFKVKW LRLHDLPFQK TLHLKNPLND YKPVKISRDC QELSQEIGEA
201: LCELLDGKTD VGDNLRKNDF SGDDLPPRRP FMEPSCSLPG EEYNLSSMHM TWTSMLYPSL LYQHKAEANR FHLAHQRSTG PFLPENLPIS SGPSKVTRVK
301: HPRISGNFTS VQVDHDMSSG FDVWNMSAER SPLASTLTED DILEMVTWPD EKCKCHLGFW MKVVAKLCDG
101: ILEEAFHNSG KVILIFSVNM SGFFQGYAQM MSSVGWRRDN VWSQGSGGNN PWGRSFKVKW LRLHDLPFQK TLHLKNPLND YKPVKISRDC QELSQEIGEA
201: LCELLDGKTD VGDNLRKNDF SGDDLPPRRP FMEPSCSLPG EEYNLSSMHM TWTSMLYPSL LYQHKAEANR FHLAHQRSTG PFLPENLPIS SGPSKVTRVK
301: HPRISGNFTS VQVDHDMSSG FDVWNMSAER SPLASTLTED DILEMVTWPD EKCKCHLGFW MKVVAKLCDG
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMVVAY LLVTYAENFI PLRPLVLELD IFCKSCCLVE SRIVMTHYWK LGENICSIFQ TLSYFSVLFL IHNTYISQCL
401: AEFCIDVTGT SFCFLRSIMR SGYVVVVCLT KSCDCVFLLF FAVL
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMVVAY LLVTYAENFI PLRPLVLELD IFCKSCCLVE SRIVMTHYWK LGENICSIFQ TLSYFSVLFL IHNTYISQCL
401: AEFCIDVTGT SFCFLRSIMR SGYVVVVCLT KSCDCVFLLF FAVL
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.