Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47426 | Canola | nucleus | 95.39 | 94.03 |
| CDY04384 | Canola | nucleus | 91.35 | 91.62 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 66.57 | 52.03 |
| KRH27989 | Soybean | cytosol | 39.48 | 51.12 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 48.99 | 45.95 |
| Solyc08g007760.2.1 | Tomato | nucleus | 39.48 | 45.82 |
| KRH77450 | Soybean | nucleus | 49.86 | 43.69 |
| Solyc08g007750.2.1 | Tomato | nucleus | 43.23 | 40.65 |
| Solyc08g007730.2.1 | Tomato | cytosol | 40.35 | 35.44 |
| PGSC0003DMT400032616 | Potato | cytosol | 19.31 | 28.88 |
| Bra014881.1-P | Field mustard | nucleus | 26.22 | 15.69 |
| Bra010767.1-P | Field mustard | nucleus | 27.67 | 15.24 |
Protein Annotations
| EnsemblPlants:Bra033125.1 | EnsemblPlants:Bra033125.1-P | EnsemblPlantsGene:Bra033125 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 |
| PFAM:PF04146 | PFscan:PS50882 | SEG:seg | UniParc:UPI00025471E7 | UniProt:M4EWE1 | MapMan:35.1 |
Description
AT4G11970 (E=7e-124) | YT521-B-like family protein
Coordinates
chrA02:-:16733758..16735579
Molecular Weight (calculated)
39294.5 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.839
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDTTAKEN VAVVDWKQDI ANSDDPESSC YRSKEDRKPS NAVRGHFLGS KNKSKPGYQT RYFIIKSLNY DNIQLSVERG IWATQVMNEP ILEGAFHNSG
101: RVVLIFSVNM SGFFQGYAEM LSPVGWRRDH IWSQGGGKNN PWGRSFKVKW LRLSELPFQK TLHLKNPLND YKPVKISRDC QELPGDIGEA LCELLDAHSC
201: DDGLLNRDDY STKRSRVEPP SSSGDEEYNN NMWGHYPPAV YSNQDDLSRF HLAQQGGYGV EQEKYLQFNS WGLPLESPLA STLTDDDFLN MSYEEYVEIH
301: SRCMRQLGLP VIPQSHATQE PSSKTDDGSN GSSKDRSSSR KRGRDSS
101: RVVLIFSVNM SGFFQGYAEM LSPVGWRRDH IWSQGGGKNN PWGRSFKVKW LRLSELPFQK TLHLKNPLND YKPVKISRDC QELPGDIGEA LCELLDAHSC
201: DDGLLNRDDY STKRSRVEPP SSSGDEEYNN NMWGHYPPAV YSNQDDLSRF HLAQQGGYGV EQEKYLQFNS WGLPLESPLA STLTDDDFLN MSYEEYVEIH
301: SRCMRQLGLP VIPQSHATQE PSSKTDDGSN GSSKDRSSSR KRGRDSS
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.