Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04384 | Canola | nucleus | 53.38 | 68.5 |
| CDY47426 | Canola | nucleus | 53.83 | 67.9 |
| Bra033125.1-P | Field mustard | nucleus | 52.03 | 66.57 |
| KRH27989 | Soybean | cytosol | 33.11 | 54.85 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 40.54 | 48.65 |
| KRH77450 | Soybean | nucleus | 37.39 | 41.92 |
| Solyc08g007760.2.1 | Tomato | nucleus | 27.48 | 40.8 |
| Solyc08g007750.2.1 | Tomato | nucleus | 30.63 | 36.86 |
| Solyc08g007730.2.1 | Tomato | cytosol | 31.08 | 34.94 |
| PGSC0003DMT400032616 | Potato | cytosol | 15.99 | 30.6 |
| AT1G30460.1 | Thale cress | nucleus | 21.62 | 15.21 |
Protein Annotations
| Gene3D:3.10.590.10 | MapMan:35.1 | EntrezGene:826804 | ProteinID:AEE83076.1 | ProteinID:ANM66375.1 | ArrayExpress:AT4G11970 |
| EnsemblPlantsGene:AT4G11970 | RefSeq:AT4G11970 | TAIR:AT4G11970 | RefSeq:AT4G11970-TAIR-G | EnsemblPlants:AT4G11970.1 | TAIR:AT4G11970.1 |
| Unigene:At.48848 | UniProt:F4JPV2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR007275 | RefSeq:NP_001328272.1 | RefSeq:NP_192934.2 |
| PFAM:PF04146 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50882 | PANTHER:PTHR12357 |
| PANTHER:PTHR12357:SF3 | TMHMM:TMhelix | UniParc:UPI000034F1E6 | InterPro:YTH_domain | : | : |
Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
Coordinates
chr4:+:7180377..7183677
Molecular Weight (calculated)
50493.6 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.343
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMVVAY LLVTYAENFI PLRPLVLELD IFCKSCCLVE SRIVMTHYWK LGENICSIFQ TLSYFSVLFL IHNTYISQCL
401: AEFCIDVTGT SFCFLRSIMR SGYVVVVCLT KSCDCVFLLF FAVL
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMVVAY LLVTYAENFI PLRPLVLELD IFCKSCCLVE SRIVMTHYWK LGENICSIFQ TLSYFSVLFL IHNTYISQCL
401: AEFCIDVTGT SFCFLRSIMR SGYVVVVCLT KSCDCVFLLF FAVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.