CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033125.1-P	Field mustard	nucleus	94.03	95.39
CDY04384	Canola	nucleus	93.18	94.8
AT4G11970.1	Thale cress	cytosol, nucleus, plasma membrane	67.9	53.83
KRH27989	Soybean	cytosol	40.62	53.36
VIT_02s0025g04760.t01	Wine grape	nucleus	50.0	47.57
Solyc08g007760.2.1	Tomato	nucleus	38.92	45.82
KRH77450	Soybean	nucleus	50.85	45.2
Solyc08g007750.2.1	Tomato	nucleus	42.61	40.65
Solyc08g007730.2.1	Tomato	cytosol	39.2	34.94
PGSC0003DMT400032616	Potato	cytosol	19.6	29.74
CDX98205	Canola	nucleus	26.42	17.1
CDX77591	Canola	nucleus	28.41	16.81
CDY12057	Canola	cytosol, nucleus, peroxisome	28.41	15.24
CDX90251	Canola	nucleus	4.83	7.52
CDY52193	Canola	nucleus	3.69	7.22

Protein Annotations

EnsemblPlants:CDY47426	EnsemblPlantsGene:GSBRNA2T00087443001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF3	PFAM:PF04146
PFscan:PS50882	ProteinID:CDY47426	ProteinID:CDY47426.1	SEG:seg	UniParc:UPI0004EEEC9B	UniProt:A0A078IC62
MapMan:35.1	:	:	:	:	:

Description

BnaA02g21560DBnaA02g21560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC62]

Coordinates

chrLK032715:+:97202..99853

Molecular Weight (calculated)

39791.0 Da

IEP (calculated)

5.895

GRAVY (calculated)

-0.856

Length

352 amino acids

Sequence
(BLAST)

001: MSSDTTAKEN VSVVDSSLTD WKQDIANSDD PESSCYRSKG DRQPSNAERG HFLGSKNKSK PGYQTRYFII KSLNYDNIQL SVERGIWATQ VMNEPILEGA
101: FHNSGRVVLI FSVNMSGFFQ GYAEMLSPVG WRRDHIWSQG GGKNNPWGRS FKVKWLRLSE LPFQKTLHLK NPLNDYKPVK ISRDCQELPG DIGEALCELL
201: DAHSCDDGLL NRDDYSTKRS RVEPPSSSGD EEYNNNMWGH YPPAVYSNQD DLSRFHLAQQ GGYGVEQEKY LQFNSWGLPL ESPLASTLTD DDFLNMSYEE
301: YVEIHSRCMR QLGLPVIPQS RATQEPSSKT DDGSNGSSKD RSSSRKRGRD SS

Best Arabidopsis Sequence Match ( AT4G11970.5 )
(BLAST)

001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS

Arabidopsis Description

YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.