Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52193 | Canola | nucleus | 75.66 | 95.0 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 53.1 | 45.11 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 75.66 | 26.07 |
| CDX98205 | Canola | nucleus | 62.39 | 25.92 |
| CDX77591 | Canola | nucleus | 64.6 | 24.54 |
| HORVU0Hr1G015410.3 | Barley | cytosol | 15.49 | 16.99 |
| TraesCS6B01G167200.1 | Wheat | cytosol | 20.35 | 14.79 |
| TraesCS6A01G138900.1 | Wheat | nucleus | 17.7 | 13.51 |
| CDY47426 | Canola | nucleus | 7.52 | 4.83 |
| CDY04384 | Canola | nucleus | 6.64 | 4.34 |
Protein Annotations
| EnsemblPlants:CDX90251 | EnsemblPlantsGene:GSBRNA2T00150819001 | Gene3D:4.10.1000.10 | GO:A0A078DLU6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 |
| PFscan:PS50103 | ProteinID:CDX90251 | ProteinID:CDX90251.1 | SEG:seg | SMART:SM00356 | SUPFAM:SSF90229 |
| UniParc:UPI0004EF44C9 | MapMan:16.2.1.2.5 | : | : | : | : |
Description
BnaA08g17330D
Coordinates
chrLK031862:-:923541..925519
Molecular Weight (calculated)
25313.9 Da
IEP (calculated)
7.710
GRAVY (calculated)
-0.725
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDADGLSFD FEGGLDSGPI QPTASVPVAP LENQSSAAVN LTPSYDHSSA AAAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQYDKAR MPICRFFRVH
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTS YNYGPNRFYQ PRNAAPQLGD VKPQVQVQTQ EPGNLQQQQQ
201: QPQQSQHQPG LIPSLMRWSS LRLETV
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTS YNYGPNRFYQ PRNAAPQLGD VKPQVQVQTQ EPGNLQQQQQ
201: QPQQSQHQPG LIPSLMRWSS LRLETV
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MVYTLSPTLS RCCLTLFFHG
401: S
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MVYTLSPTLS RCCLTLFFHG
401: S
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.