Factsheet for PGSC0003DMT400054373

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400011757
PGSC0003DMT400037076
PGSC0003DMT400037077
PGSC0003DMT400054373
PGSC0003DMT400059810
PGSC0003DMT400074732
PGSC0003DMT400075619
PGSC0003DMT400075788
PGSC0003DMT400084196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT1G30460.1	PGSC0003DMT400075788	AT2G01730.1	16897494
AT1G30460.1	PGSC0003DMT400011757	AT3G06560.1	16897494
AT1G30460.1	PGSC0003DMT400074732	AT3G06560.1	16897494
AT1G30460.1	PGSC0003DMT400011757	AT3G06560.1	18479511
AT1G30460.1	PGSC0003DMT400074732	AT3G06560.1	18479511
AT1G30460.1	PGSC0003DMT400075619	AT4G04885.1	18479511
AT1G30460.1	PGSC0003DMT400037076	AT4G25550.1	18479511
AT1G30460.1	PGSC0003DMT400037077	AT4G25550.1	18479511
AT1G30460.1	PGSC0003DMT400084196	AT4G25550.1	18479511
AT1G30460.1	PGSC0003DMT400008250	AT5G58040.1	16282318
AT1G30460.1	PGSC0003DMT400008250	AT5G58040.1	18479511
AT1G30460.1	PGSC0003DMT400059810	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52193	Canola	nucleus	43.98	65.0
CDX90251	Canola	nucleus	45.11	53.1
Zm00001d014379_P001	Maize	nucleus	40.98	44.31
Zm00001d036595_P001	Maize	nucleus	41.35	43.82
Solyc02g070240.2.1	Tomato	nucleus	69.17	27.42
Solyc02g021760.2.1	Tomato	nucleus	65.04	25.11
GSMUA_Achr9P30440_001	Banana	nucleus	54.14	21.92
Bra010767.1-P	Field mustard	nucleus	51.5	21.75
VIT_10s0003g04600.t01	Wine grape	nucleus	54.14	21.4
AT1G30460.1	Thale cress	nucleus	50.38	21.24
KRH36762	Soybean	nucleus	54.14	21.15
KRH11760	Soybean	nucleus	54.51	20.98
HORVU0Hr1G015410.3	Barley	cytosol	16.17	20.87
GSMUA_Achr6P19820_001	Banana	nucleus	53.01	20.38
Bra014881.1-P	Field mustard	nucleus	42.48	19.48
EER88812	Sorghum	cytosol, nucleus, peroxisome	45.11	18.6
TraesCS7D01G450100.1	Wheat	nucleus	45.11	18.46
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	44.74	18.39
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	43.98	18.28
TraesCS6B01G167200.1	Wheat	cytosol	20.68	17.68
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	43.98	17.06
TraesCS6A01G138900.1	Wheat	nucleus	18.8	16.89
PGSC0003DMT400032616	Potato	cytosol	5.64	6.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400054373	EnsemblPlantsGene:PGSC0003DMG400021104	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	PFscan:PS50103
PGSC:PGSC0003DMG400021104	SEG:seg	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0002950782	UniProt:M1BW73
MapMan:16.2.1.2.5	:	:	:	:	:

Description

Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 [Source:PGSC_GENE;Acc:PGSC0003DMG400021104]

Coordinates

chr2:-:29414166..29416398

Molecular Weight (calculated)

29237.4 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.692

Length

266 amino acids

Sequence
(BLAST)

001: MDDGEGGLNF DFEGGLDTGP THPTASVPVL QSAGHITTGP APNASVALVP PGGGVGQGGD GSFVGNRRSF RQTVCRHWLR SLCMKGDACG FLHQYDKSRM
101: PVCRFFRLYG ECREQDCVYK HTNEDIKECN MYKLGFCPNG PDCRYRHAKL PGPPPPVVEV LQRIQNLTSY GYSNRFFQNR NTNYSTQADK SQIPQVPNVM
201: NQAVKSTAAE PPIGQPHQPH QQQVQQPQHQ GAPTQTQTLP SSQQNQAAIP LPQGPSRCVQ SFKVFT

Best Arabidopsis Sequence Match ( AT1G30460.2 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MVYTLSPTLS RCCLTLFFHG
401: S

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.