Factsheet for Bra010767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra004171.1-P
Bra006786.1-P
Bra009712.1-P
Bra010457.1-P
Bra010767.1-P
Bra012994.1-P
Bra013899.1-P
Bra014881.1-P
Bra016588.1-P
Bra019155.1-P
Bra022557.1-P
Bra026637.1-P
Bra029526.1-P
Bra029588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Bra016588.1-P	AT1G17760.1	18479511
AT1G30460.1	Bra010767.1-P	AT1G30460.1	18479511
AT1G30460.1	Bra014881.1-P	AT1G30460.1	18479511
AT1G30460.1	Bra004171.1-P	AT1G66500.1	18479511
AT1G30460.1	Bra026637.1-P	AT2G01730.1	16897494
AT1G30460.1	Bra029588.1-P	AT3G06560.1	16897494
AT1G30460.1	Bra029588.1-P	AT3G06560.1	18479511
AT1G30460.1	Bra029526.1-P	AT4G04885.1	18479511
AT1G30460.1	Bra010457.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra013899.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra019155.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra009712.1-P	AT5G23880.1	16897494
AT1G30460.1	Bra009712.1-P	AT5G23880.1	18479511
AT1G30460.1	Bra022557.1-P	AT5G51660.1	16897494
AT1G30460.1	Bra022557.1-P	AT5G51660.1	18479511
AT1G30460.1	Bra002677.1-P	AT5G58040.1	16282318
AT1G30460.1	Bra006786.1-P	AT5G58040.1	16282318
AT1G30460.1	Bra002677.1-P	AT5G58040.1	18479511
AT1G30460.1	Bra006786.1-P	AT5G58040.1	18479511
AT1G30460.1	Bra012994.1-P	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G30460.1	Thale cress	nucleus	82.38	82.25
Bra014881.1-P	Field mustard	nucleus	75.4	81.9
CDY12057	Canola	cytosol, nucleus, peroxisome	83.17	79.88
VIT_10s0003g04600.t01	Wine grape	nucleus	62.22	58.25
KRH36762	Soybean	nucleus	62.06	57.42
KRH11760	Soybean	nucleus	62.7	57.16
Solyc02g070240.2.1	Tomato	nucleus	60.79	57.08
GSMUA_Achr9P30440_001	Banana	nucleus	58.89	56.47
Solyc02g021760.2.1	Tomato	nucleus	61.11	55.88
GSMUA_Achr6P19820_001	Banana	nucleus	59.68	54.34
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	54.29	53.44
EER88812	Sorghum	cytosol, nucleus, peroxisome	54.44	53.18
HORVU7Hr1G106340.5	Barley	cytosol	53.81	52.23
TraesCS7D01G450100.1	Wheat	nucleus	53.49	51.85
TraesCS7A01G461800.1	Wheat	nucleus	53.33	51.69
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	53.02	51.62
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	21.75	51.5
TraesCS7B01G363200.2	Wheat	nucleus	53.33	51.45
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	54.92	50.44
Zm00001d014379_P001	Maize	nucleus	17.3	44.31
Zm00001d036595_P001	Maize	nucleus	17.46	43.82
Bra033125.1-P	Field mustard	nucleus	15.24	27.67

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra010767	EnsemblPlants:Bra010767.1	EnsemblPlants:Bra010767.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR007275	UniProt:M4D2R4	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0002546F08	InterPro:YTH_domain	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding

Coordinates

chrA08:+:16314658..16319039

Molecular Weight (calculated)

69768.5 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.933

Length

630 amino acids

Sequence
(BLAST)

001: MEDADGLSFD FEGGLDSGPI QPTASVPVAP LENQSSAAVN LTPSYDHSSA AAAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQYDKAR MPICRFFRVH
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTS YNYGPNRFYQ PRNAAPQLGD VKPQVQVQTQ EPGNLQQQQQ
201: QQPQQSQHQV SQTQTQTQTQ NTADQTSHPL PRGLNRYFVV KSNNSENFEL SVQQGVWATQ RSNEAKLNEA FDTVNNVILI FSVNRTRHFQ GCAKMTSRIG
301: GYIGGGNWKN EHGTQQYGGN FSVKWLKLCE LSFHKTRNLR NPYNENLPVK ISRDCQELEP SVGEELASLL YLEPDSKLMA ISIAAEAKRE EEKAKGVNPE
401: SRAENPDIVP FEDNEDEEEE EDESEEEEDG MANGPQGRGR GRGMMWPPQM PMGRGIRPMP GMGGFPLGVM NPADAFPYGP GGYNGMPDPF GMGPRPFGPY
501: GPRFGGDFRG PVPGMMFPGR PPQQFPHGGY GMMGGSGRGG PLMGGMGNAP RGGGRPMYYP PATTTASSAR PGPTSSNRRT TPERSDDRGA VDESHEMEQF
601: EVGNSLRNEE TESEDEDKAP RRSRHGDKRR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.