Factsheet for Bra012994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003913.1-P
Bra007985.1-P
Bra009712.1-P
Bra010767.1-P
Bra014881.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	Bra010767.1-P	AT1G30460.1	18479511
AT5G60940.1	Bra014881.1-P	AT1G30460.1	18479511
AT5G60940.1	Bra003913.1-P	AT1G71800.1	18479511
AT5G60940.1	Bra007985.1-P	AT1G71800.1	18479511
AT5G60940.1	Bra009712.1-P	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02182	Canola	cytosol	92.84	99.05
AT5G60940.1	Thale cress	cytosol	83.0	86.48
Solyc12g038540.1.1	Tomato	cytosol	10.74	73.85
PGSC0003DMT400059810	Potato	cytosol	25.5	69.51
GSMUA_Achr6P35010_001	Banana	cytosol	49.89	66.77
KRH54731	Soybean	cytosol, nucleus	61.52	64.71
KRH63183	Soybean	cytosol	44.3	61.68
KXG37531	Sorghum	cytosol	57.05	60.28
TraesCS5D01G402200.1	Wheat	cytosol	55.93	59.95
Os03t0754900-02	Rice	cytosol	56.82	58.53
TraesCS5A01G392400.1	Wheat	cytosol	55.48	58.49
TraesCS5B01G397200.1	Wheat	cytosol	55.7	58.45
HORVU5Hr1G095960.3	Barley	cytosol	55.03	58.16
VIT_17s0000g05080.t01	Wine grape	cytosol	61.74	57.02
Zm00001d034054_P002	Maize	cytosol	55.48	55.48

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra012994	EnsemblPlants:Bra012994.1	EnsemblPlants:Bra012994.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4D934
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025404FE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:+:21158873..21161331

Molecular Weight (calculated)

49034.9 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.221

Length

447 amino acids

Sequence
(BLAST)

001: MEISGSLEQA LQEGNILRQL NALIVASDVA SATMTPLNVE VSPNRLLELV SKGLAAENNG SLRGVSSSVL LPTSYGSVAN PRTASIDFSA THVKGSSKAL
101: PKHESKQLSE HKSVVRCARF SSDGMFFATG GADTSIKLFE VPKVKQMLSG DTQARPLIRS FYDHAEPIND LDFHPRSTIL VSSAKDNCIK FFDFSKTTAK
201: RAFKVFQDTH NVRSVSFHPS GEFLLAGTDH AVPHLYDVNT YQCFLPSSFP DNGVNGGINQ VRYSSTGSVY VTASKDGAIR LFDGVSAKCV RSISSAHGKA
301: EVTSAVFTRD QRFVLSSGKD STVKLWEIAS GRMVKEYIGA KRLKLRSQVM FSLSNFSEQL GPAYSERSSL LLWVTQAIFN DTEEFVISID EGNNEVVTWD
401: ARTAEKVAKW PSNHNGVPRW IEHSPVEPVF VTCGTTDRSV RFWKESV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.