CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EER93127
KXG27890

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	EER88812	AT1G30460.1	18479511
AT5G60940.1	KXG27890	AT1G71800.1	18479511
AT5G60940.1	EER93127	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034054_P002	Maize	cytosol	95.74	90.6
HORVU5Hr1G095960.3	Barley	cytosol	82.74	82.74
Os03t0754900-02	Rice	cytosol	84.4	82.26
TraesCS5D01G402200.1	Wheat	cytosol	80.61	81.77
TraesCS5A01G392400.1	Wheat	cytosol	81.56	81.37
TraesCS5B01G397200.1	Wheat	cytosol	81.32	80.75
GSMUA_Achr6P35010_001	Banana	cytosol	57.68	73.05
PGSC0003DMT400059810	Potato	cytosol	26.95	69.51
Solyc12g038540.1.1	Tomato	cytosol	10.4	67.69
KRH54731	Soybean	cytosol, nucleus	66.9	66.59
KRH63183	Soybean	cytosol	47.04	61.99
AT5G60940.1	Thale cress	cytosol	62.41	61.54
CDY02182	Canola	cytosol	60.28	60.86
CDY58694	Canola	cytosol	61.94	60.51
VIT_17s0000g05080.t01	Wine grape	cytosol	67.85	59.3
Bra012994.1-P	Field mustard	cytosol	60.28	57.05
Solyc12g038530.1.1	Tomato	cytosol	36.17	51.34
Solyc12g038550.1.1	Tomato	plastid	23.88	37.27

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	ProteinID:AAM47578.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG37531	ProteinID:KXG37531	ProteinID:KXG37531.1
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1
UniProt:Q8LKU8	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G085800	SUPFAM:SSF50978	UniParc:UPI00000A9A25	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:6641614..6645281

Molecular Weight (calculated)

45717.9 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.180

Length

423 amino acids

Sequence
(BLAST)

001: MNEAVQEAKL LRQVNALIVA HLRSQNLGQA AAAVAAATMT PISAAESVPA NQLLRLVAKG LAAEGGGGAA SAFDSAGFGG AVQPLGSSAV DFSMQDVKGS
101: SKSFPKHEAK HVSDHKNAAR CAKFSPDGKY FATGSADTSI KFFEVAKIKQ TMVGDSKDGP ARPVIRTFYD HTQAINDLDF HPESPILISA AKDNTIKFFD
201: FSKTNARKAF RVIQDTHNVR SVCFHPCGDY LLAGTDHPVA HLYDINTFTC YLSANAQDSS SPINQVRYSC TGSLYVTASK DGSLRIWDGV SAECVRPIIG
301: AHGSAEATSA IFTRDERYVL SCGKDSCVKL WEVGTGRLVK QYAGAIRRQF RCQAVFNETE EFVLSVDEQN NEVVVWDALT AEKVARLPSG STGAPRWLDH
401: SPVEPVFVIC GNDRSIRFWK QTV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.