CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88092
KXG22737
KXG30711
KXG37531
KXG37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	KXG22737	AT1G17760.1	12379796
AT1G71800.1	KXG22737	AT1G17760.1	18479511
AT1G71800.1	EER88092	AT5G10350.1	18479511
AT1G71800.1	KXG30711	AT5G10350.1	18479511
AT1G71800.1	KXG37677	AT5G58040.1	18479511
AT1G71800.1	KXG37531	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004779_P001	Maize	nucleus	91.02	90.83
TraesCS4B01G094500.1	Wheat	nucleus	80.2	80.2
TraesCS4D01G091300.1	Wheat	nucleus	79.8	79.8
Zm00001d053041_P002	Maize	cytosol	93.88	78.9
Os11t0176100-01	Rice	nucleus	78.37	77.58
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	79.39	73.12
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.33	57.33
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	33.67	54.82
GSMUA_Achr10P...	Banana	nucleus	42.04	53.23
Solyc02g069160.2.1	Tomato	nucleus	44.29	42.63
KRH35025	Soybean	nucleus	47.35	42.57
KRG91748	Soybean	nucleus	47.55	42.21
CDX68301	Canola	cytosol, nucleus, plastid	39.39	41.96
AT1G71800.1	Thale cress	nucleus	39.39	41.87
PGSC0003DMT400026767	Potato	nucleus	43.47	41.85
CDY36682	Canola	cytosol, nucleus, plastid	38.98	41.52
CDY03684	Canola	nucleus	37.55	40.8
Bra007985.1-P	Field mustard	nucleus	37.55	40.8
Bra003913.1-P	Field mustard	plastid	38.98	39.22
VIT_18s0001g01800.t01	Wine grape	nucleus	42.04	37.8
EER88888	Sorghum	plastid	15.92	34.67
CDY37934	Canola	nucleus	37.55	32.74
PGSC0003DMT400033572	Potato	plastid	26.94	32.51
OQU93282	Sorghum	cytosol	16.73	31.78
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.04	27.31

Protein Annotations

Gene3D:1.10.20.70	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	UniProt:A0A1B6PQE2	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge
InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0031047	GO:GO:0031123	GO:GO:0031124	GO:GO:0040007	GO:GO:0042868	GO:GO:0045892
GO:GO:0048589	GO:GO:0060968	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192	EnsemblPlants:KXG27890
ProteinID:KXG27890	ProteinID:KXG27890.1	InterPro:L27_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PFscan:PS51022	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3005G059800	SUPFAM:SSF54928	UniParc:UPI00081AEA55	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:6166026..6171634

Molecular Weight (calculated)

52365.5 Da

IEP (calculated)

6.833

GRAVY (calculated)

-0.350

Length

490 amino acids

Sequence
(BLAST)

001: MAAAPAGAQN RCVFVGNIPY DATEEQLVQI CEEVGPVVSF RLVIDKETGK PKGYGFCEYK DEETALSARR NLQGYEINGR QLRVDFAENG RNTDRNREKG
101: RGGPGMASNV DSQKQLAGTS VVGETNLHQP VGLPPAIHAA SVMAGVLGGA QTANVQNGLP VQYGLGNDPL THYLARMSRH QLHEVMAELK FLTTQNKEHS
201: KTLLQGIPQL PKALFQAQIM LGMVTPQMMQ MAKSQQPSGA LAQSSSHLNE PYPQPDAMIP VVSRPLSLPT NILPNPTELH SFPQHQHASQ PPVKMFPHGH
301: QSGIAAQSPI LHQSLGGSSS VPTQSLATSV GLISQVQPPF VPQHPGPPVM PTSVQQLPLT HPHLAQVAAA PDILPNEIRV ADQASHLTEF NHPSKLRKLE
401: DGTSVPGIVN SSHAVYTAPL QSVGPSGPSG SYSAGAVSLQ QPGNEGQLTP DVESALLQQV LQLTPEQLSS LPPEQQQQVI ELQKMLSAGK

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.