CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G098160.1	Barley	nucleus, plastid	58.22	58.74
TraesCS7A01G424200.1	Wheat	cytosol, nucleus, plastid	58.67	58.41
TraesCS7D01G417300.1	Wheat	plastid	59.11	58.33
TraesCS7B01G325700.1	Wheat	mitochondrion	56.44	52.92
Os06t0698400-01	Rice	cytosol, nucleus, plastid	28.89	52.85
OQU93282	Sorghum	cytosol	44.44	38.76
KXG27890	Sorghum	cytosol	34.67	15.92

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8065461	UniProt:C5Z8U1	ncoils:Coil	EnsemblPlants:EER88888
ProteinID:EER88888	ProteinID:EER88888.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005847	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0098789
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF76	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3010G247700	SUPFAM:SSF54928
UniParc:UPI0001A89246	RefSeq:XP_002437521.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:58767418..58768653

Molecular Weight (calculated)

24087.5 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.405

Length

225 amino acids

Sequence
(BLAST)

001: MAAAAASCRC SSVVFVGNIP YHASEDELRA ACEEIGPVVS LRVATDNKGG GSRRPRGFAF VEYLDDETAL SACRNLHGRA LRGRDLRVGL AQRTPPPDVD
101: EEPVGVEGAT HAASLLHARP RGAVTSYLAG LSRRQLRELL DALEREDAAL MEHAKREFAG LSTLIEQARV LLDMASAPPG AAVAKNRKRG ARVQDRPGDS
201: PESATQAPKL RRVQDGEHVP GVADR

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.