Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G041890.1 | Barley | nucleus | 28.68 | 54.41 |
| TraesCS2D01G215500.1 | Wheat | nucleus | 47.67 | 53.48 |
| TraesCS2D01G215900.1 | Wheat | nucleus | 46.51 | 52.17 |
| Os06t0248200-01 | Rice | cytosol | 32.17 | 50.61 |
| EER88888 | Sorghum | plastid | 38.76 | 44.44 |
| KXG27890 | Sorghum | cytosol | 31.78 | 16.73 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A1Z5SBI2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlants:OQU93282 | ProteinID:OQU93282 |
| ProteinID:OQU93282.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF76 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3001G513200 | SUPFAM:SSF54928 | UniParc:UPI000B426C5A | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:78076716..78078290
Molecular Weight (calculated)
27104.2 Da
IEP (calculated)
7.293
GRAVY (calculated)
-0.291
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAATHLQ PPLPSEGAMD GCAMSLAAAA ANCRCSRVVY VGNIPFHASE KEVRDACELI GPVRSLRLAA DPGTGKRRGY AFVEYPDDET ARSACRNLHG
101: HALRGRELRV GLAGRAGRRG VGARGEHEPV GLEDAVHAAS LVAGTPPPDS VTRFLAARSA RELREIVGQL EGHGPDALRL LQEQVPGLAA AVDLARHLID
201: MVAADAATEE ARNKKRTGVE GSGSDDGDHR AKLRKVDLEE GGGFKDHGAV SAARVMCF
101: HALRGRELRV GLAGRAGRRG VGARGEHEPV GLEDAVHAAS LVAGTPPPDS VTRFLAARSA RELREIVGQL EGHGPDALRL LQEQVPGLAA AVDLARHLID
201: MVAADAATEE ARNKKRTGVE GSGSDDGDHR AKLRKVDLEE GGGFKDHGAV SAARVMCF
001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
Arabidopsis Description
CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.