Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G215900.1 | Wheat | nucleus | 98.26 | 98.26 |
| HORVU2Hr1G041890.1 | Barley | nucleus | 37.83 | 63.97 |
| OQU93282 | Sorghum | cytosol | 53.48 | 47.67 |
| Os06t0248200-01 | Rice | cytosol | 33.04 | 46.34 |
| TraesCS7D01G417300.1 | Wheat | plastid | 43.04 | 43.42 |
| TraesCS4D01G091300.1 | Wheat | nucleus | 35.65 | 16.73 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G215500.1 | EnsemblPlantsGene:TraesCS2D01G215500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF76 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:178286661..178287353
Molecular Weight (calculated)
24725.5 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.306
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSIAAAAGN CRCSRVVYVG NIPFKAEEKE VRDACELIGP VLSFNLAADA DTGKRKGYAF VEYADDATAQ SACRNLHGHR LLDRELRVGL AERAGAARRR
101: RRGDHEPVGM EDAIHAASLV NDRGRLAVVS SVTRHLAGAS RHELREALDT FENCGPENCK VLTEYVPGLD IAMEMVQRLL DMAAADDAAG EAKRKKRVSA
201: CPPPDDHGAK LMKLEDGGKA TPVFAGVACV
101: RRGDHEPVGM EDAIHAASLV NDRGRLAVVS SVTRHLAGAS RHELREALDT FENCGPENCK VLTEYVPGLD IAMEMVQRLL DMAAADDAAG EAKRKKRVSA
201: CPPPDDHGAK LMKLEDGGKA TPVFAGVACV
001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
Arabidopsis Description
CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.