Factsheet for Zm00001d007684_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013380_P001
Zm00001d018112_P004
Zm00001d023775_P001
Zm00001d033843_P007
Zm00001d034054_P002
Zm00001d037200_P004
Zm00001d038093_P007
Zm00001d044869_P001
Zm00001d052198_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	12379796
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	18479511
AT1G71800.1	Zm00001d018112_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d023775_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d037200_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d044869_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d052198_P002	AT5G10350.1	18479511
AT1G71800.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G71800.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT1G71800.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	21.3	20.44
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	24.54	17.61
GSMUA_Achr10P...	Banana	nucleus	25.0	13.95
Bra007985.1-P	Field mustard	nucleus	25.46	12.2
CDY03684	Canola	nucleus	25.46	12.2
KXG27890	Sorghum	cytosol	27.31	12.04
Zm00001d004779_P001	Maize	nucleus	27.31	12.02
Os11t0176100-01	Rice	nucleus	27.31	11.92
CDX68301	Canola	cytosol, nucleus, plastid	25.0	11.74
CDY36682	Canola	cytosol, nucleus, plastid	25.0	11.74
AT1G71800.1	Thale cress	nucleus	24.54	11.5
TraesCS4B01G094500.1	Wheat	nucleus	25.46	11.22
Bra003913.1-P	Field mustard	plastid	25.0	11.09
TraesCS4D01G091300.1	Wheat	nucleus	25.0	11.02
Solyc02g069160.2.1	Tomato	nucleus	25.93	11.0
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	26.85	10.9
PGSC0003DMT400026767	Potato	nucleus	25.46	10.81
CDY37934	Canola	nucleus	25.93	9.96
KRG91748	Soybean	nucleus	25.46	9.96
Zm00001d053041_P002	Maize	cytosol	26.85	9.95
KRH35025	Soybean	nucleus	25.0	9.91
VIT_18s0001g01800.t01	Wine grape	nucleus	24.07	9.54
Zm00001d024806_P001	Maize	cytosol	12.96	8.28
PGSC0003DMT400033572	Potato	plastid	3.24	1.72

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6F7Y6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM27334.1	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54928
SignalP:SignalP-noTM	UniParc:UPI000843670D	EnsemblPlantsGene:Zm00001d007684	EnsemblPlants:Zm00001d007684_P001	EnsemblPlants:Zm00001d007684_T001	SEG:seg

Description

Cleavage stimulating factor 64

Coordinates

chr2:-:237387357..237389393

Molecular Weight (calculated)

24952.9 Da

IEP (calculated)

4.507

GRAVY (calculated)

-0.494

Length

216 amino acids

Sequence
(BLAST)

001: MAIHMVLLHY FFRCNARVFN QDTSDWDWEE DLEEDEEMIS CYQGQTPSPI NGPSFFAWEA CASGYSSPTD AMFHLLNVSE YLDQVQDARD AYCRHEAARL
101: VIDKETGKPK GYGFCEYKDE ETALSACWNL QGYEINGRRL CVDFAENRRN TDKNREKVDN PQNYYRRVFP TTLEFFVNMS SCIVFVPVND NSCAFSDHPV
201: SPVAISYKHV YVCTTA

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.