CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83892
CDX88655
CDX96753
CDY02182
CDY11833
CDY43886
CDY58694
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	CDX83892	AT1G17760.1	12379796
AT1G71800.1	CDX96753	AT1G17760.1	12379796
AT1G71800.1	CDX83892	AT1G17760.1	18479511
AT1G71800.1	CDX96753	AT1G17760.1	18479511
AT1G71800.1	CDX88655	AT5G58040.1	18479511
AT1G71800.1	CDY11833	AT5G58040.1	18479511
AT1G71800.1	CDY43886	AT5G58040.1	18479511
AT1G71800.1	CDY70580	AT5G58040.1	18479511
AT1G71800.1	CDY02182	AT5G60940.1	18479511
AT1G71800.1	CDY58694	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03684	Canola	nucleus	76.51	95.34
CDY36682	Canola	cytosol, nucleus, plastid	58.72	71.74
CDX68301	Canola	cytosol, nucleus, plastid	58.54	71.52
AT1G71800.1	Thale cress	nucleus	58.19	70.93
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	22.95	57.33
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	26.33	49.17
GSMUA_Achr10P...	Banana	nucleus	29.0	42.12
KRG91748	Soybean	nucleus	37.9	38.59
KRH35025	Soybean	nucleus	37.37	38.53
Solyc02g069160.2.1	Tomato	nucleus	34.88	38.51
PGSC0003DMT400026767	Potato	nucleus	34.52	38.11
VIT_18s0001g01800.t01	Wine grape	nucleus	36.83	37.98
KXG27890	Sorghum	cytosol	32.74	37.55
Zm00001d004779_P001	Maize	nucleus	32.74	37.47
TraesCS4B01G094500.1	Wheat	nucleus	32.03	36.73
TraesCS4D01G091300.1	Wheat	nucleus	31.85	36.53
Os11t0176100-01	Rice	nucleus	31.49	35.76
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	32.74	34.59
Zm00001d053041_P002	Maize	cytosol	32.21	31.05
PGSC0003DMT400033572	Potato	plastid	20.28	28.08
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.96	25.93

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	GO:A0A078HKS9	UniProt:A0A078HKS9	EnsemblPlants:CDY37934	ProteinID:CDY37934
ProteinID:CDY37934.1	InterPro:CSTF2_hinge	InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124
EnsemblPlantsGene:GSBRNA2T00064945001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDD798	SEG:seg	:	:

Description

BnaC02g20770DBnaC02g20770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKS9]

Coordinates

chrLK032412:-:78774..82268

Molecular Weight (calculated)

61980.0 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.569

Length

562 amino acids

Sequence
(BLAST)

001: MASSSSSQRR CVFVGNIPYD ATEEQLREIC GEVGPVVSFR LVTDRETGKP KGYGFCEYKD EETALSARRN LQSYEINGRQ LRVDFAENDK GTDKPRDQGQ
101: GGTGLPPPVA ATESQKQVGG AVDSSMHQPV GIHLAMQAAS VMADALGGPQ VGSQSTLLVP ASDPLTLHLA KMSRTQLSEI ITSIKLMATQ NKEETRQLLV
201: SRPHLLKAVF LAQIMLGIVS PQVLQTPNIV QAPNHMTGSS IQDTHLSGSS QSLLPPLAQR PQQLNRPPHS QFPVQQSSKQ PFSQIPQPGV NPPPRSQVKG
301: LSETASPFQR QKQVVPASNA IQPSQVPRPP LTKSAMQQGG QMASLNYGKR INNEGPHESI DRPSKMMRVD DRRNPPFHTG HASNSMLPNP LQLQEKAPQA
401: LLSPDVQSTL LQQVMNLTPD QLRMLTPEQQ QEVVKLQQAL KQQDHLAIAE DGWSAFALEQ NVGTVVYLVT QTKPLFELKF QLQHMQPKRI QTFIWDSSRD
501: FLCGSYKWQA TVTVTRNILG RDGFGKVYKG RLARWNSCCC QETEGGSYPR RRTPVSDRGG DE

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.